Hb_185224_010

Information

Type -
Description -
Location Contig185224: 2-334
Sequence    

Annotation

kegg
ID rcu:RCOM_0577380
description zinc finger protein, putative
nr
ID XP_002526296.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9C9F4
description Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1
trembl
ID B9SJX7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0577380 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein at1g68190 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185224_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000200_200 0.1826536471 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
3 Hb_000031_080 0.203901343 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
4 Hb_008215_030 0.207525088 - - hypothetical protein 3 [Hevea brasiliensis]
5 Hb_000340_500 0.2087725297 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
6 Hb_015430_010 0.215201584 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
7 Hb_000173_050 0.2177799756 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_001123_210 0.220692851 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
9 Hb_006018_060 0.226273754 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
10 Hb_000152_100 0.2268211171 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
11 Hb_009778_040 0.2271258164 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
12 Hb_189216_030 0.2276363991 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
13 Hb_110390_010 0.2294765089 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
14 Hb_001105_090 0.2302392081 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
15 Hb_002249_070 0.230877968 - - gcn4-complementing protein, putative [Ricinus communis]
16 Hb_007441_260 0.2333809911 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
17 Hb_000809_060 0.2341302739 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
18 Hb_003581_300 0.2344119907 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
19 Hb_098533_020 0.2356297684 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
20 Hb_000329_270 0.2369705526 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_185224_010 Hb_185224_010 Hb_000200_200 Hb_000200_200 Hb_185224_010--Hb_000200_200 Hb_000031_080 Hb_000031_080 Hb_185224_010--Hb_000031_080 Hb_008215_030 Hb_008215_030 Hb_185224_010--Hb_008215_030 Hb_000340_500 Hb_000340_500 Hb_185224_010--Hb_000340_500 Hb_015430_010 Hb_015430_010 Hb_185224_010--Hb_015430_010 Hb_000173_050 Hb_000173_050 Hb_185224_010--Hb_000173_050 Hb_005656_190 Hb_005656_190 Hb_000200_200--Hb_005656_190 Hb_000200_200--Hb_000340_500 Hb_189216_030 Hb_189216_030 Hb_000200_200--Hb_189216_030 Hb_000130_450 Hb_000130_450 Hb_000200_200--Hb_000130_450 Hb_001959_010 Hb_001959_010 Hb_000200_200--Hb_001959_010 Hb_098533_020 Hb_098533_020 Hb_000031_080--Hb_098533_020 Hb_009778_040 Hb_009778_040 Hb_000031_080--Hb_009778_040 Hb_002243_060 Hb_002243_060 Hb_000031_080--Hb_002243_060 Hb_000809_060 Hb_000809_060 Hb_000031_080--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_000031_080--Hb_002081_030 Hb_000465_510 Hb_000465_510 Hb_000031_080--Hb_000465_510 Hb_008215_030--Hb_009778_040 Hb_008215_030--Hb_015430_010 Hb_001105_090 Hb_001105_090 Hb_008215_030--Hb_001105_090 Hb_116420_020 Hb_116420_020 Hb_008215_030--Hb_116420_020 Hb_008215_030--Hb_000031_080 Hb_008215_030--Hb_000809_060 Hb_000340_500--Hb_002081_030 Hb_000340_500--Hb_000809_060 Hb_000258_250 Hb_000258_250 Hb_000340_500--Hb_000258_250 Hb_002686_180 Hb_002686_180 Hb_000340_500--Hb_002686_180 Hb_024074_010 Hb_024074_010 Hb_000340_500--Hb_024074_010 Hb_001726_040 Hb_001726_040 Hb_000340_500--Hb_001726_040 Hb_003581_300 Hb_003581_300 Hb_015430_010--Hb_003581_300 Hb_015430_010--Hb_001105_090 Hb_006018_060 Hb_006018_060 Hb_015430_010--Hb_006018_060 Hb_000178_120 Hb_000178_120 Hb_015430_010--Hb_000178_120 Hb_002042_080 Hb_002042_080 Hb_015430_010--Hb_002042_080 Hb_015430_010--Hb_009778_040 Hb_006970_140 Hb_006970_140 Hb_000173_050--Hb_006970_140 Hb_002909_020 Hb_002909_020 Hb_000173_050--Hb_002909_020 Hb_003178_020 Hb_003178_020 Hb_000173_050--Hb_003178_020 Hb_003126_130 Hb_003126_130 Hb_000173_050--Hb_003126_130 Hb_000740_040 Hb_000740_040 Hb_000173_050--Hb_000740_040 Hb_002249_070 Hb_002249_070 Hb_000173_050--Hb_002249_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286194 1.61136 8.1881 6.58413 0.48934 0.701824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7135 11.2416 7.20329 4.55737 0

CAGE analysis