Hb_185274_010

Information

Type -
Description -
Location Contig185274: 33-1689
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_330174
description hypothetical protein
nr
ID XP_002868411.1
description hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID Q0G9Q1
description Protein Ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1
trembl
ID D7MHQ6
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_330174 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185274_010 0.0 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
2 Hb_005399_050 0.1104388798 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
3 Hb_005399_040 0.1180550114 - - RNA polymerase beta subunit [Hevea brasiliensis]
4 Hb_000992_090 0.1198141203 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
5 Hb_106552_030 0.1227190266 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
6 Hb_000261_390 0.1255766027 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
7 Hb_000029_390 0.1286925721 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000156_240 0.1292959468 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
9 Hb_007595_020 0.1297692129 - - maturase K [Hevea brasiliensis]
10 Hb_000009_470 0.1326494708 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_001135_170 0.1326509201 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
12 Hb_003963_040 0.1328181564 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
13 Hb_007595_050 0.1334691091 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
14 Hb_001135_190 0.1338858456 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
15 Hb_003944_010 0.1353139854 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
16 Hb_010080_070 0.1383448449 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
17 Hb_023344_040 0.1394260807 - - conserved hypothetical protein [Ricinus communis]
18 Hb_087797_010 0.1415645532 - - kinase, putative [Ricinus communis]
19 Hb_011344_030 0.1427424839 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
20 Hb_002995_060 0.1441632091 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_185274_010 Hb_185274_010 Hb_005399_050 Hb_005399_050 Hb_185274_010--Hb_005399_050 Hb_005399_040 Hb_005399_040 Hb_185274_010--Hb_005399_040 Hb_000992_090 Hb_000992_090 Hb_185274_010--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_185274_010--Hb_106552_030 Hb_000261_390 Hb_000261_390 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390 Hb_007504_040 Hb_007504_040 Hb_005399_050--Hb_007504_040 Hb_005399_050--Hb_005399_040 Hb_003963_040 Hb_003963_040 Hb_005399_050--Hb_003963_040 Hb_007595_050 Hb_007595_050 Hb_005399_050--Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_005399_050--Hb_003861_150 Hb_005399_040--Hb_000261_390 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_023344_040 Hb_023344_040 Hb_000992_090--Hb_023344_040 Hb_000992_090--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_000992_090--Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_000992_090--Hb_000009_470 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_156850_020 Hb_156850_020 Hb_106552_030--Hb_156850_020 Hb_010080_070 Hb_010080_070 Hb_106552_030--Hb_010080_070 Hb_106552_030--Hb_000992_090 Hb_012940_020 Hb_012940_020 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010 Hb_000261_390--Hb_001135_170 Hb_001832_180 Hb_001832_180 Hb_000261_390--Hb_001832_180 Hb_000261_390--Hb_011344_030 Hb_000261_390--Hb_023344_040 Hb_004631_020 Hb_004631_020 Hb_000261_390--Hb_004631_020 Hb_001287_070 Hb_001287_070 Hb_000261_390--Hb_001287_070 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000282_100 Hb_000282_100 Hb_000029_390--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_000029_390--Hb_004631_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254344 0.572273 2.68912 0.988815 0.107926 0.311952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449901 13.5811

CAGE analysis