Hb_185274_020

Information

Type -
Description -
Location Contig185274: 1316-3240
Sequence    

Annotation

kegg
ID fve:101296732
description protein ycf2 A-like
nr
ID YP_008592532.1
description Ycf2 (chloroplast) [Andrographis paniculata]
swissprot
ID -
description -
trembl
ID T1UNP5
description Protein Ycf2 OS=Andrographis paniculata GN=ycf2 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18134: 283-502 , PASA_asmbl_18135: 1883-2346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185274_020 0.0 - - Ycf2 (chloroplast) [Andrographis paniculata]
2 Hb_001083_040 0.1069490633 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
3 Hb_003125_100 0.1192549327 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
4 Hb_000156_240 0.1311428568 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
5 Hb_003032_090 0.1352939382 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
6 Hb_000029_380 0.1359892178 - - conserved hypothetical protein [Ricinus communis]
7 Hb_185274_010 0.145255285 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
8 Hb_007595_050 0.1453591999 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
9 Hb_103465_010 0.1467769742 - - RNA polymerase beta subunit [Hevea brasiliensis]
10 Hb_003963_040 0.1474794725 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
11 Hb_001338_150 0.1484964179 - - hypothetical chloroplast RF1 [Dillenia indica]
12 Hb_001674_050 0.1509697899 - - cytochrome b6 (chloroplast) [Apios americana]
13 Hb_006925_030 0.1571529178 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
14 Hb_001338_080 0.1588565764 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
15 Hb_006816_040 0.1589264191 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
16 Hb_003693_030 0.1617347564 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
17 Hb_034168_010 0.162415729 - - hypothetical protein [Azospirillum sp. CAG:260]
18 Hb_141708_010 0.1663787458 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
19 Hb_004542_030 0.1681748882 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
20 Hb_003944_010 0.1708022691 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_185274_020 Hb_185274_020 Hb_001083_040 Hb_001083_040 Hb_185274_020--Hb_001083_040 Hb_003125_100 Hb_003125_100 Hb_185274_020--Hb_003125_100 Hb_000156_240 Hb_000156_240 Hb_185274_020--Hb_000156_240 Hb_003032_090 Hb_003032_090 Hb_185274_020--Hb_003032_090 Hb_000029_380 Hb_000029_380 Hb_185274_020--Hb_000029_380 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_004542_030 Hb_004542_030 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_003125_100--Hb_001083_040 Hb_189099_020 Hb_189099_020 Hb_003125_100--Hb_189099_020 Hb_034168_010 Hb_034168_010 Hb_003125_100--Hb_034168_010 Hb_041813_060 Hb_041813_060 Hb_003125_100--Hb_041813_060 Hb_062273_010 Hb_062273_010 Hb_003125_100--Hb_062273_010 Hb_000156_240--Hb_103465_010 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_001338_150 Hb_001338_150 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_012940_020 Hb_012940_020 Hb_000029_380--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_000029_380--Hb_068804_110 Hb_005228_060 Hb_005228_060 Hb_000029_380--Hb_005228_060 Hb_156850_020 Hb_156850_020 Hb_000029_380--Hb_156850_020 Hb_007595_050 Hb_007595_050 Hb_000029_380--Hb_007595_050 Hb_005399_050 Hb_005399_050 Hb_185274_010--Hb_005399_050 Hb_005399_040 Hb_005399_040 Hb_185274_010--Hb_005399_040 Hb_000992_090 Hb_000992_090 Hb_185274_010--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_185274_010--Hb_106552_030 Hb_000261_390 Hb_000261_390 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0173225 0.0900816 0.268354 0.0939738 0.0260935 0.129275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0468899 0.0199387 2.08838

CAGE analysis