Hb_185326_010

Information

Type -
Description -
Location Contig185326: 56-638
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_002525845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185326_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001251_030 0.2966506358 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
3 Hb_005800_040 0.2966814595 - - -
4 Hb_103452_020 0.2986561365 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_004128_120 0.3081320294 - - hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
6 Hb_171108_010 0.3119285183 - - -
7 Hb_013394_010 0.3261787315 - - PREDICTED: laccase-14-like [Malus domestica]
8 Hb_011344_080 0.3314652196 - - -
9 Hb_000905_070 0.3348258685 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
10 Hb_052761_010 0.3413193953 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
11 Hb_002493_030 0.3456816577 - - -
12 Hb_002637_020 0.3465567597 - - -
13 Hb_000427_080 0.3537117452 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
14 Hb_000739_090 0.3564530669 - - -
15 Hb_006156_020 0.3586910591 - - -
16 Hb_095853_010 0.3591630672 - - -
17 Hb_008071_030 0.3645012096 - - -
18 Hb_008891_010 0.3671081547 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
19 Hb_003534_040 0.3717466397 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
20 Hb_004466_010 0.3727908927 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_185326_010 Hb_185326_010 Hb_001251_030 Hb_001251_030 Hb_185326_010--Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_185326_010--Hb_005800_040 Hb_103452_020 Hb_103452_020 Hb_185326_010--Hb_103452_020 Hb_004128_120 Hb_004128_120 Hb_185326_010--Hb_004128_120 Hb_171108_010 Hb_171108_010 Hb_185326_010--Hb_171108_010 Hb_013394_010 Hb_013394_010 Hb_185326_010--Hb_013394_010 Hb_001251_030--Hb_005800_040 Hb_001251_030--Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_001251_030--Hb_011344_080 Hb_052761_010 Hb_052761_010 Hb_001251_030--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_001251_030--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_001251_030--Hb_006156_020 Hb_005800_040--Hb_013394_010 Hb_005800_040--Hb_011344_080 Hb_005800_040--Hb_052761_010 Hb_005800_040--Hb_000739_090 Hb_005800_040--Hb_006156_020 Hb_008891_010 Hb_008891_010 Hb_103452_020--Hb_008891_010 Hb_103452_020--Hb_013394_010 Hb_108854_010 Hb_108854_010 Hb_103452_020--Hb_108854_010 Hb_000789_130 Hb_000789_130 Hb_103452_020--Hb_000789_130 Hb_103452_020--Hb_011344_080 Hb_000028_640 Hb_000028_640 Hb_004128_120--Hb_000028_640 Hb_002637_020 Hb_002637_020 Hb_004128_120--Hb_002637_020 Hb_027998_030 Hb_027998_030 Hb_004128_120--Hb_027998_030 Hb_009246_010 Hb_009246_010 Hb_004128_120--Hb_009246_010 Hb_000668_010 Hb_000668_010 Hb_004128_120--Hb_000668_010 Hb_000905_070 Hb_000905_070 Hb_171108_010--Hb_000905_070 Hb_002493_030 Hb_002493_030 Hb_171108_010--Hb_002493_030 Hb_004007_150 Hb_004007_150 Hb_171108_010--Hb_004007_150 Hb_043655_010 Hb_043655_010 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_013394_010--Hb_011344_080 Hb_013394_010--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34144 0.0441717 0 0.110261 1.0318 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.352884 0.359572

CAGE analysis