Hb_185340_020

Information

Type -
Description -
Location Contig185340: 1513-2145
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185340_020 0.0 - - -
2 Hb_007259_030 0.000283016 - - -
3 Hb_008248_010 0.0078224641 - - -
4 Hb_006011_060 0.0156647698 - - -
5 Hb_003392_020 0.0163484035 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
6 Hb_003430_010 0.0229173871 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
7 Hb_000123_320 0.0244188247 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
8 Hb_123238_010 0.0311631234 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
9 Hb_006586_020 0.0317607151 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_003344_020 0.0331847551 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
11 Hb_001659_030 0.0346372941 - - -
12 Hb_101778_020 0.0360483797 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
13 Hb_080293_010 0.0393765887 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
14 Hb_011924_010 0.0429327446 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
15 Hb_000002_160 0.0437138827 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
16 Hb_083270_010 0.0516103569 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
17 Hb_187024_020 0.0523707242 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
18 Hb_001271_040 0.0551660626 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
19 Hb_068447_010 0.0556115481 - - protein with unknown function [Ricinus communis]
20 Hb_007676_070 0.0593024803 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]

Gene co-expression network

sample Hb_185340_020 Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_185340_020--Hb_007259_030 Hb_008248_010 Hb_008248_010 Hb_185340_020--Hb_008248_010 Hb_006011_060 Hb_006011_060 Hb_185340_020--Hb_006011_060 Hb_003392_020 Hb_003392_020 Hb_185340_020--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_185340_020--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_185340_020--Hb_000123_320 Hb_007259_030--Hb_008248_010 Hb_007259_030--Hb_006011_060 Hb_007259_030--Hb_003392_020 Hb_007259_030--Hb_003430_010 Hb_007259_030--Hb_000123_320 Hb_008248_010--Hb_006011_060 Hb_008248_010--Hb_003392_020 Hb_008248_010--Hb_003430_010 Hb_008248_010--Hb_000123_320 Hb_006011_060--Hb_003392_020 Hb_006011_060--Hb_003430_010 Hb_006011_060--Hb_000123_320 Hb_003392_020--Hb_003430_010 Hb_003392_020--Hb_000123_320 Hb_006586_020 Hb_006586_020 Hb_003392_020--Hb_006586_020 Hb_003430_010--Hb_000123_320 Hb_003430_010--Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_003430_010--Hb_101778_020 Hb_000123_320--Hb_006586_020 Hb_000123_320--Hb_101778_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.30811 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.559449 0

CAGE analysis