Hb_185391_010

Information

Type -
Description -
Location Contig185391: 2540-3472
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0008237
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185391_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_000958_180 0.0358540837 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
3 Hb_015146_010 0.0652130846 - - -
4 Hb_019392_010 0.0657350396 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
5 Hb_058620_050 0.0693506522 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_148986_010 0.0758247327 - - unnamed protein product [Vitis vinifera]
7 Hb_005614_040 0.0763665776 - - unnamed protein product [Coffea canephora]
8 Hb_000127_250 0.0802098359 - - Alliin lyase precursor, putative [Ricinus communis]
9 Hb_006925_010 0.0815832227 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
10 Hb_058620_040 0.0851631036 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
11 Hb_000086_710 0.0870621937 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
12 Hb_001266_110 0.0877200203 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009568_010 0.0914089942 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
14 Hb_007483_040 0.0932824832 - - PREDICTED: protein SRG1-like [Jatropha curcas]
15 Hb_012532_020 0.0949718394 - - Isoflavone reductase, putative [Ricinus communis]
16 Hb_003334_020 0.0964414035 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
17 Hb_000141_070 0.0964693187 - - l-lactate dehydrogenase, putative [Ricinus communis]
18 Hb_000059_100 0.0982167742 - - Basic blue protein, putative [Ricinus communis]
19 Hb_036291_010 0.0987181148 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
20 Hb_004693_010 0.0994798208 - - hypothetical protein JCGZ_02321 [Jatropha curcas]

Gene co-expression network

sample Hb_185391_010 Hb_185391_010 Hb_000958_180 Hb_000958_180 Hb_185391_010--Hb_000958_180 Hb_015146_010 Hb_015146_010 Hb_185391_010--Hb_015146_010 Hb_019392_010 Hb_019392_010 Hb_185391_010--Hb_019392_010 Hb_058620_050 Hb_058620_050 Hb_185391_010--Hb_058620_050 Hb_148986_010 Hb_148986_010 Hb_185391_010--Hb_148986_010 Hb_005614_040 Hb_005614_040 Hb_185391_010--Hb_005614_040 Hb_000958_180--Hb_019392_010 Hb_001266_110 Hb_001266_110 Hb_000958_180--Hb_001266_110 Hb_006925_010 Hb_006925_010 Hb_000958_180--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_000958_180--Hb_000086_710 Hb_000958_180--Hb_058620_050 Hb_000836_400 Hb_000836_400 Hb_015146_010--Hb_000836_400 Hb_000127_250 Hb_000127_250 Hb_015146_010--Hb_000127_250 Hb_015146_010--Hb_005614_040 Hb_015146_010--Hb_000958_180 Hb_012532_020 Hb_012532_020 Hb_015146_010--Hb_012532_020 Hb_019392_010--Hb_148986_010 Hb_019392_010--Hb_000086_710 Hb_019392_010--Hb_006925_010 Hb_019392_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_019392_010--Hb_003334_020 Hb_058620_040 Hb_058620_040 Hb_058620_050--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_058620_050--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_058620_050--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040 Hb_148986_010--Hb_006925_010 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_148986_010--Hb_000086_710 Hb_005614_040--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_005614_040--Hb_000059_100 Hb_000503_040 Hb_000503_040 Hb_005614_040--Hb_000503_040 Hb_005614_040--Hb_009568_010 Hb_001699_240 Hb_001699_240 Hb_005614_040--Hb_001699_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0191327 0.0211917 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.665657 0

CAGE analysis