Hb_185447_010

Information

Type -
Description -
Location Contig185447: 153-815
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03290g
description POPTRDRAFT_570945; hypothetical protein
nr
ID KDP33240.1
description hypothetical protein JCGZ_13512 [Jatropha curcas]
swissprot
ID Q9ASZ8
description Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
trembl
ID A0A067KLV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185447_010 0.0 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
2 Hb_000208_120 0.1208336667 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
3 Hb_003976_020 0.1344981355 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
4 Hb_114310_110 0.1445431219 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_018133_090 0.1474393977 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001439_060 0.1481331792 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
7 Hb_000608_170 0.1603425084 - - F23N19.4 [Arabidopsis thaliana]
8 Hb_000928_010 0.1607385606 - - Cell division protein ftsZ, putative [Ricinus communis]
9 Hb_012760_190 0.1636076104 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
10 Hb_002284_310 0.1649279731 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
11 Hb_001898_160 0.1658903008 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
12 Hb_000603_230 0.1712248602 - - copper-transporting atpase paa1, putative [Ricinus communis]
13 Hb_000270_260 0.1717533322 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
14 Hb_006371_010 0.1718778734 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
15 Hb_001584_200 0.1737067298 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
16 Hb_075751_010 0.1759403179 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
17 Hb_000462_090 0.1771659761 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
18 Hb_000135_030 0.1796817925 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
19 Hb_001341_070 0.1806839625 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
20 Hb_002217_260 0.181240762 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]

Gene co-expression network

sample Hb_185447_010 Hb_185447_010 Hb_000208_120 Hb_000208_120 Hb_185447_010--Hb_000208_120 Hb_003976_020 Hb_003976_020 Hb_185447_010--Hb_003976_020 Hb_114310_110 Hb_114310_110 Hb_185447_010--Hb_114310_110 Hb_018133_090 Hb_018133_090 Hb_185447_010--Hb_018133_090 Hb_001439_060 Hb_001439_060 Hb_185447_010--Hb_001439_060 Hb_000608_170 Hb_000608_170 Hb_185447_010--Hb_000608_170 Hb_000505_010 Hb_000505_010 Hb_000208_120--Hb_000505_010 Hb_001898_160 Hb_001898_160 Hb_000208_120--Hb_001898_160 Hb_002284_310 Hb_002284_310 Hb_000208_120--Hb_002284_310 Hb_000270_260 Hb_000270_260 Hb_000208_120--Hb_000270_260 Hb_000735_130 Hb_000735_130 Hb_000208_120--Hb_000735_130 Hb_003976_020--Hb_018133_090 Hb_000462_090 Hb_000462_090 Hb_003976_020--Hb_000462_090 Hb_001824_090 Hb_001824_090 Hb_003976_020--Hb_001824_090 Hb_003976_020--Hb_000608_170 Hb_001584_200 Hb_001584_200 Hb_003976_020--Hb_001584_200 Hb_000135_030 Hb_000135_030 Hb_114310_110--Hb_000135_030 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_001049_110 Hb_001049_110 Hb_018133_090--Hb_001049_110 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_015941_020 Hb_015941_020 Hb_018133_090--Hb_015941_020 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_001439_060--Hb_000337_050 Hb_000608_170--Hb_000928_010 Hb_000608_170--Hb_000462_090 Hb_005282_020 Hb_005282_020 Hb_000608_170--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000608_170--Hb_002685_060 Hb_000340_150 Hb_000340_150 Hb_000608_170--Hb_000340_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04807 0.208191 3.42678 2.39946 3.78171 2.76673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26233 4.92276 8.48251 1.82211 10.6084

CAGE analysis