Hb_185467_010

Information

Type -
Description -
Location Contig185467: 11193-16093
Sequence    

Annotation

kegg
ID dosa:Os01t0794900-01
description Os01g0794900; Hypothetical protein.
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A9EXJ6
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18138: 11546-16131 , PASA_asmbl_18139: 13698-14124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185467_010 0.0 - - -
2 Hb_024714_020 0.0890601398 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000721_010 0.0912976559 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004993_010 0.1002813165 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
5 Hb_000046_300 0.1016972123 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_001936_050 0.1021244827 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
7 Hb_002874_070 0.102488763 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
8 Hb_009404_010 0.107792516 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
9 Hb_006065_020 0.1090552901 - - -
10 Hb_000742_250 0.1099188509 - - Tubulin beta-6 chain [Gossypium arboreum]
11 Hb_008453_150 0.114589565 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
12 Hb_004324_280 0.1148132085 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
13 Hb_033834_010 0.1149380613 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_007786_010 0.1154037817 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
15 Hb_011639_050 0.1162214837 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000890_040 0.1188456703 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
17 Hb_185467_020 0.1190207747 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_009411_020 0.1190225611 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
19 Hb_109842_010 0.1199778242 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
20 Hb_001141_330 0.1202081994 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]

Gene co-expression network

sample Hb_185467_010 Hb_185467_010 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_010222_030 Hb_010222_030 Hb_024714_020--Hb_010222_030 Hb_009411_020 Hb_009411_020 Hb_024714_020--Hb_009411_020 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_000230_330 Hb_000230_330 Hb_024714_020--Hb_000230_330 Hb_006065_020 Hb_006065_020 Hb_000721_010--Hb_006065_020 Hb_001847_020 Hb_001847_020 Hb_000721_010--Hb_001847_020 Hb_000721_010--Hb_000046_300 Hb_000000_080 Hb_000000_080 Hb_000721_010--Hb_000000_080 Hb_000926_020 Hb_000926_020 Hb_000721_010--Hb_000926_020 Hb_150528_010 Hb_150528_010 Hb_004993_010--Hb_150528_010 Hb_041091_010 Hb_041091_010 Hb_004993_010--Hb_041091_010 Hb_007786_010 Hb_007786_010 Hb_004993_010--Hb_007786_010 Hb_004852_030 Hb_004852_030 Hb_004993_010--Hb_004852_030 Hb_001416_040 Hb_001416_040 Hb_004993_010--Hb_001416_040 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000666_110 Hb_000666_110 Hb_000046_300--Hb_000666_110 Hb_002024_040 Hb_002024_040 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_001357_090 Hb_001357_090 Hb_000046_300--Hb_001357_090 Hb_000046_300--Hb_006065_020 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_001936_050--Hb_002874_070 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_000340_510 Hb_000340_510 Hb_001936_050--Hb_000340_510 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.5867 11.7282 15.3706 5.9033 35.2436 42.7246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3623 18.7485 33.0177 8.24922 7.8296

CAGE analysis