Hb_185467_020

Information

Type -
Description -
Location Contig185467: 11884-15356
Sequence    

Annotation

kegg
ID rcu:RCOM_1482950
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002524249.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9SE30
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1482950 PE=4 SV=1
Gene Ontology
ID GO:0008233
description subtilisin-like serine endopeptidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185467_020 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_008453_150 0.0483193039 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
3 Hb_002631_050 0.0567566461 - - membrane associated ring finger 1,8, putative [Ricinus communis]
4 Hb_002874_070 0.0743075245 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
5 Hb_000803_150 0.0790664796 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
6 Hb_001936_050 0.0832361321 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
7 Hb_001981_070 0.0841693022 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
8 Hb_014568_030 0.0842176572 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_000057_040 0.0849023446 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_041091_010 0.0858187072 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
11 Hb_004852_030 0.087929887 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
12 Hb_002890_340 0.0885714064 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_098993_010 0.0891943465 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
14 Hb_001584_110 0.0893781117 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
15 Hb_003297_030 0.0895889125 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
16 Hb_022256_040 0.0906380054 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
17 Hb_005754_060 0.0908534463 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000490_030 0.0915335953 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
19 Hb_000017_120 0.0927684636 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
20 Hb_000084_310 0.0943615529 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_185467_020 Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_008453_150--Hb_002631_050 Hb_000084_310 Hb_000084_310 Hb_008453_150--Hb_000084_310 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_002874_070--Hb_022256_040 Hb_002874_070--Hb_001936_050 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_001936_050--Hb_000340_510 Hb_001981_070--Hb_000084_310 Hb_000165_030 Hb_000165_030 Hb_001981_070--Hb_000165_030 Hb_001981_070--Hb_002631_050 Hb_004852_030 Hb_004852_030 Hb_001981_070--Hb_004852_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68457 0.721351 0.60806 0.828458 3.68525 4.53183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61058 2.19902 3.3532 1.06809 0.629319

CAGE analysis