Hb_185608_010

Information

Type -
Description -
Location Contig185608: 647-1305
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22210g
description hypothetical protein
nr
ID XP_006384915.1
description hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
swissprot
ID Q8RUN2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1
trembl
ID U5GN42
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22210g PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185608_010 0.0 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
2 Hb_057862_010 0.0375675786 - - protein binding protein, putative [Ricinus communis]
3 Hb_162450_010 0.0518165103 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_049955_010 0.0545400462 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
5 Hb_011344_040 0.0559960915 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_007382_110 0.0648974462 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
7 Hb_003858_010 0.0712209564 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
8 Hb_093084_030 0.0728665922 - - oleosin2 [Plukenetia volubilis]
9 Hb_181908_010 0.0745335992 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
10 Hb_142204_010 0.0745441154 - - pyruvate decarboxylase [Saccharum officinarum]
11 Hb_010193_020 0.0783988511 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
12 Hb_005532_080 0.0817643793 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
13 Hb_008008_040 0.082213563 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
14 Hb_004218_270 0.0830749713 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
15 Hb_166360_010 0.0831914413 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
16 Hb_005269_060 0.0841581263 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
17 Hb_001454_420 0.0862537268 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_011082_030 0.0899984797 - - hypothetical protein RCOM_0852210 [Ricinus communis]
19 Hb_007113_060 0.0900046537 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
20 Hb_000343_070 0.0914715176 - - hypothetical protein JCGZ_06265 [Jatropha curcas]

Gene co-expression network

sample Hb_185608_010 Hb_185608_010 Hb_057862_010 Hb_057862_010 Hb_185608_010--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_185608_010--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_185608_010--Hb_049955_010 Hb_011344_040 Hb_011344_040 Hb_185608_010--Hb_011344_040 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_003858_010 Hb_003858_010 Hb_185608_010--Hb_003858_010 Hb_057862_010--Hb_162450_010 Hb_057862_010--Hb_049955_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_057862_010--Hb_011344_040 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_162450_010--Hb_093084_030 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_049955_010--Hb_005532_080 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_007382_110--Hb_005532_080 Hb_142204_010 Hb_142204_010 Hb_007382_110--Hb_142204_010 Hb_000707_090 Hb_000707_090 Hb_007382_110--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_007382_110--Hb_000557_080 Hb_007382_110--Hb_166360_010 Hb_181908_010 Hb_181908_010 Hb_003858_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_003858_010--Hb_008008_040 Hb_001454_420 Hb_001454_420 Hb_003858_010--Hb_001454_420 Hb_003858_010--Hb_000227_360 Hb_003858_010--Hb_142204_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.68282 33.4895 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.266499 16.0727

CAGE analysis