Hb_185616_010

Information

Type -
Description -
Location Contig185616: 91-555
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_002526126.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID B9SJF7
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0136880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185616_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_012543_020 6.9941e-06 - - -
3 Hb_000482_130 1.13544e-05 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_000510_380 1.62469e-05 - - -
5 Hb_061463_010 3.72988e-05 - - Cucumisin precursor, putative [Ricinus communis]
6 Hb_002130_010 5.01851e-05 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_000098_160 0.0001146609 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003052_160 0.0001146609 - - -
9 Hb_000413_310 0.0001273776 - - -
10 Hb_007393_010 0.0002254826 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_000914_160 0.0002444339 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
12 Hb_006053_010 0.0002567366 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_018006_020 0.0002739653 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
14 Hb_000111_160 0.0003353866 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_004899_270 0.0003632595 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
16 Hb_123098_010 0.000383821 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_028462_010 0.0003865289 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
18 Hb_002997_130 0.0007508194 - - -
19 Hb_000270_820 0.0518537386 - - -
20 Hb_003675_010 0.0832625185 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_185616_010 Hb_185616_010 Hb_012543_020 Hb_012543_020 Hb_185616_010--Hb_012543_020 Hb_000482_130 Hb_000482_130 Hb_185616_010--Hb_000482_130 Hb_000510_380 Hb_000510_380 Hb_185616_010--Hb_000510_380 Hb_061463_010 Hb_061463_010 Hb_185616_010--Hb_061463_010 Hb_002130_010 Hb_002130_010 Hb_185616_010--Hb_002130_010 Hb_000098_160 Hb_000098_160 Hb_185616_010--Hb_000098_160 Hb_012543_020--Hb_000482_130 Hb_012543_020--Hb_000510_380 Hb_012543_020--Hb_061463_010 Hb_012543_020--Hb_002130_010 Hb_012543_020--Hb_000098_160 Hb_000482_130--Hb_000510_380 Hb_000482_130--Hb_061463_010 Hb_000482_130--Hb_002130_010 Hb_000482_130--Hb_000098_160 Hb_000510_380--Hb_061463_010 Hb_000510_380--Hb_002130_010 Hb_000510_380--Hb_000098_160 Hb_061463_010--Hb_002130_010 Hb_061463_010--Hb_000098_160 Hb_002130_010--Hb_000098_160 Hb_003052_160 Hb_003052_160 Hb_002130_010--Hb_003052_160 Hb_000098_160--Hb_003052_160 Hb_000413_310 Hb_000413_310 Hb_000098_160--Hb_000413_310 Hb_007393_010 Hb_007393_010 Hb_000098_160--Hb_007393_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151618 0.119098 0 0 0

CAGE analysis