Hb_185666_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig185666: 446-1111
Sequence    

Annotation

kegg
ID rcu:RCOM_1491630
description Transcriptional factor TINY, putative
nr
ID XP_012073419.1
description PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID A0A067KQN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06329 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor tiny-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185666_010 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
2 Hb_000979_070 0.1062124774 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
3 Hb_015934_100 0.1126904745 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
4 Hb_020025_030 0.1173559362 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
5 Hb_008215_020 0.1181396436 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_000504_060 0.1248656525 - - Cell division cycle protein cdt2, putative [Ricinus communis]
7 Hb_000094_230 0.1270468377 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
8 Hb_000140_200 0.1279832874 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
9 Hb_085600_010 0.129899655 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
10 Hb_002766_070 0.1309032097 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_002759_200 0.1333941496 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
12 Hb_002025_280 0.1371294249 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
13 Hb_001242_170 0.137159844 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005701_100 0.137222393 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
15 Hb_000984_280 0.1389779427 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
16 Hb_046615_040 0.141178752 - - unnamed protein product [Vitis vinifera]
17 Hb_010672_010 0.1434462643 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
18 Hb_005306_060 0.1450887149 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
19 Hb_003010_050 0.1455001109 - - -
20 Hb_001862_160 0.1457053964 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_185666_010 Hb_185666_010 Hb_000979_070 Hb_000979_070 Hb_185666_010--Hb_000979_070 Hb_015934_100 Hb_015934_100 Hb_185666_010--Hb_015934_100 Hb_020025_030 Hb_020025_030 Hb_185666_010--Hb_020025_030 Hb_008215_020 Hb_008215_020 Hb_185666_010--Hb_008215_020 Hb_000504_060 Hb_000504_060 Hb_185666_010--Hb_000504_060 Hb_000094_230 Hb_000094_230 Hb_185666_010--Hb_000094_230 Hb_000979_070--Hb_000094_230 Hb_000535_040 Hb_000535_040 Hb_000979_070--Hb_000535_040 Hb_001862_160 Hb_001862_160 Hb_000979_070--Hb_001862_160 Hb_000979_070--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000979_070--Hb_000140_200 Hb_180695_010 Hb_180695_010 Hb_015934_100--Hb_180695_010 Hb_133508_020 Hb_133508_020 Hb_015934_100--Hb_133508_020 Hb_096878_010 Hb_096878_010 Hb_015934_100--Hb_096878_010 Hb_185830_090 Hb_185830_090 Hb_015934_100--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_015934_100--Hb_010672_010 Hb_020025_030--Hb_000140_200 Hb_001263_030 Hb_001263_030 Hb_020025_030--Hb_001263_030 Hb_020025_030--Hb_000094_230 Hb_004531_060 Hb_004531_060 Hb_020025_030--Hb_004531_060 Hb_003656_080 Hb_003656_080 Hb_020025_030--Hb_003656_080 Hb_000977_190 Hb_000977_190 Hb_020025_030--Hb_000977_190 Hb_025163_020 Hb_025163_020 Hb_008215_020--Hb_025163_020 Hb_008215_020--Hb_004531_060 Hb_005701_100 Hb_005701_100 Hb_008215_020--Hb_005701_100 Hb_000069_650 Hb_000069_650 Hb_008215_020--Hb_000069_650 Hb_005116_030 Hb_005116_030 Hb_008215_020--Hb_005116_030 Hb_002759_200 Hb_002759_200 Hb_000504_060--Hb_002759_200 Hb_000984_280 Hb_000984_280 Hb_000504_060--Hb_000984_280 Hb_085600_010 Hb_085600_010 Hb_000504_060--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_000504_060--Hb_001242_170 Hb_000732_200 Hb_000732_200 Hb_000504_060--Hb_000732_200 Hb_000617_160 Hb_000617_160 Hb_000504_060--Hb_000617_160 Hb_000094_230--Hb_000535_040 Hb_000094_230--Hb_000140_200 Hb_000094_230--Hb_001263_030 Hb_000094_230--Hb_004531_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.285845 4.14415 4.95438 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.6133 0

CAGE analysis