Hb_185735_010

Information

Type -
Description -
Location Contig185735: 15-3050
Sequence    

Annotation

kegg
ID rcu:RCOM_1278140
description Heat shock factor protein HSF8, putative
nr
ID XP_002527650.1
description Heat shock factor protein HSF8, putative [Ricinus communis]
swissprot
ID Q40152
description Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1
trembl
ID B9SNT1
description Heat shock factor protein HSF8, putative OS=Ricinus communis GN=RCOM_1278140 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor protein hsf8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185735_010 0.0 - - Heat shock factor protein HSF8, putative [Ricinus communis]
2 Hb_001473_040 0.1718080203 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_002157_030 0.1841560321 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001541_070 0.1954762511 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
5 Hb_001214_180 0.1956125094 - - -
6 Hb_001604_150 0.2019925964 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
7 Hb_183612_070 0.2019981579 - - unnamed protein product [Vitis vinifera]
8 Hb_000920_130 0.2032733482 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001648_030 0.206208096 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
10 Hb_000120_040 0.2134606889 - - -
11 Hb_001544_030 0.2186018922 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
12 Hb_000270_120 0.2194574741 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
13 Hb_001171_050 0.2222297434 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
14 Hb_001511_070 0.2223158361 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
15 Hb_000417_200 0.2223499831 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
16 Hb_002043_030 0.2225084777 - - hypothetical protein RCOM_1486170 [Ricinus communis]
17 Hb_000130_220 0.2228105477 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
18 Hb_001405_070 0.2248347009 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
19 Hb_000086_630 0.2251738869 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
20 Hb_013399_050 0.2262217314 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_185735_010 Hb_185735_010 Hb_001473_040 Hb_001473_040 Hb_185735_010--Hb_001473_040 Hb_002157_030 Hb_002157_030 Hb_185735_010--Hb_002157_030 Hb_001541_070 Hb_001541_070 Hb_185735_010--Hb_001541_070 Hb_001214_180 Hb_001214_180 Hb_185735_010--Hb_001214_180 Hb_001604_150 Hb_001604_150 Hb_185735_010--Hb_001604_150 Hb_183612_070 Hb_183612_070 Hb_185735_010--Hb_183612_070 Hb_003929_130 Hb_003929_130 Hb_001473_040--Hb_003929_130 Hb_005188_020 Hb_005188_020 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020 Hb_001723_060 Hb_001723_060 Hb_002157_030--Hb_001723_060 Hb_001227_090 Hb_001227_090 Hb_002157_030--Hb_001227_090 Hb_004123_020 Hb_004123_020 Hb_002157_030--Hb_004123_020 Hb_001863_020 Hb_001863_020 Hb_002157_030--Hb_001863_020 Hb_046823_010 Hb_046823_010 Hb_002157_030--Hb_046823_010 Hb_000270_120 Hb_000270_120 Hb_001541_070--Hb_000270_120 Hb_002542_110 Hb_002542_110 Hb_001541_070--Hb_002542_110 Hb_000008_440 Hb_000008_440 Hb_001541_070--Hb_000008_440 Hb_001405_070 Hb_001405_070 Hb_001541_070--Hb_001405_070 Hb_000086_630 Hb_000086_630 Hb_001541_070--Hb_000086_630 Hb_007810_010 Hb_007810_010 Hb_001541_070--Hb_007810_010 Hb_000120_040 Hb_000120_040 Hb_001214_180--Hb_000120_040 Hb_000417_200 Hb_000417_200 Hb_001214_180--Hb_000417_200 Hb_009778_060 Hb_009778_060 Hb_001214_180--Hb_009778_060 Hb_001214_180--Hb_001405_070 Hb_000482_040 Hb_000482_040 Hb_001214_180--Hb_000482_040 Hb_001138_060 Hb_001138_060 Hb_001214_180--Hb_001138_060 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_140459_010 Hb_140459_010 Hb_183612_070--Hb_140459_010 Hb_003124_110 Hb_003124_110 Hb_183612_070--Hb_003124_110 Hb_183612_070--Hb_001214_180 Hb_000615_050 Hb_000615_050 Hb_183612_070--Hb_000615_050 Hb_100886_010 Hb_100886_010 Hb_183612_070--Hb_100886_010 Hb_000139_340 Hb_000139_340 Hb_183612_070--Hb_000139_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.862571 1.41408 0.73267 0.363358 0.118018 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.782018 1.37413 1.66609 0.972281 1.64032

CAGE analysis