Hb_185830_010

Information

Type -
Description -
Location Contig185830: 3195-3645
Sequence    

Annotation

kegg
ID rcu:RCOM_0820270
description STS14 protein precursor, putative
nr
ID XP_012082230.1
description PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
swissprot
ID Q40374
description Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1
trembl
ID A0A067K9R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16429 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_010 0.0 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
2 Hb_001391_020 0.1826926995 - - Arylacetamide deacetylase, putative [Ricinus communis]
3 Hb_001157_220 0.208546466 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006018_030 0.2138555438 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
5 Hb_001671_060 0.2186231892 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
6 Hb_000614_100 0.235600618 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
7 Hb_001780_070 0.2383550288 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
8 Hb_075449_050 0.2410195615 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
9 Hb_000107_070 0.2569545228 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
10 Hb_154443_010 0.2646276335 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
11 Hb_002243_080 0.2665066458 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
12 Hb_026428_010 0.2707470319 - - copper transport protein ATOX1 [Hevea brasiliensis]
13 Hb_000699_120 0.2782792139 - - DNA-binding family protein [Populus trichocarpa]
14 Hb_012508_040 0.2799784151 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
15 Hb_023214_010 0.2828341032 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
16 Hb_000617_290 0.284668927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002000_110 0.2872156563 - - ASR-like protein 2 [Hevea brasiliensis]
18 Hb_000803_050 0.2893557231 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
19 Hb_000250_010 0.2898316008 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_048937_030 0.2918741899 - - hypothetical protein RCOM_0231790 [Ricinus communis]

Gene co-expression network

sample Hb_185830_010 Hb_185830_010 Hb_001391_020 Hb_001391_020 Hb_185830_010--Hb_001391_020 Hb_001157_220 Hb_001157_220 Hb_185830_010--Hb_001157_220 Hb_006018_030 Hb_006018_030 Hb_185830_010--Hb_006018_030 Hb_001671_060 Hb_001671_060 Hb_185830_010--Hb_001671_060 Hb_000614_100 Hb_000614_100 Hb_185830_010--Hb_000614_100 Hb_001780_070 Hb_001780_070 Hb_185830_010--Hb_001780_070 Hb_001391_020--Hb_006018_030 Hb_075449_050 Hb_075449_050 Hb_001391_020--Hb_075449_050 Hb_001391_020--Hb_001671_060 Hb_001391_020--Hb_001780_070 Hb_000107_070 Hb_000107_070 Hb_001391_020--Hb_000107_070 Hb_001157_220--Hb_001671_060 Hb_000803_050 Hb_000803_050 Hb_001157_220--Hb_000803_050 Hb_008864_060 Hb_008864_060 Hb_001157_220--Hb_008864_060 Hb_001157_220--Hb_000614_100 Hb_001157_220--Hb_001780_070 Hb_002099_050 Hb_002099_050 Hb_001157_220--Hb_002099_050 Hb_006018_030--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_006018_030--Hb_048937_030 Hb_006018_030--Hb_000107_070 Hb_001638_210 Hb_001638_210 Hb_006018_030--Hb_001638_210 Hb_006018_030--Hb_001671_060 Hb_000250_010 Hb_000250_010 Hb_001671_060--Hb_000250_010 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_001671_060--Hb_000803_050 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110 Hb_000617_290 Hb_000617_290 Hb_000614_100--Hb_000617_290 Hb_000614_100--Hb_001780_070 Hb_003286_020 Hb_003286_020 Hb_000614_100--Hb_003286_020 Hb_098315_030 Hb_098315_030 Hb_000614_100--Hb_098315_030 Hb_000614_100--Hb_002099_050 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_001780_070--Hb_075449_050 Hb_001780_070--Hb_000107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562118 0 0.0742053 0 0.0884544 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11356 0.174958 0.549709 0 0

CAGE analysis