Hb_185830_060

Information

Type -
Description -
Location Contig185830: 33295-35842
Sequence    

Annotation

kegg
ID pmum:103324385
description ras-related protein RABB1c
nr
ID XP_004293420.1
description PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
swissprot
ID P92963
description Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1
trembl
ID A0A023HJ68
description Rab8 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005773
description ras-related protein rabb1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18209: 33336-35779
cDNA
(Sanger)
(ID:Location)		 029_I14.ab1: 33425-35461

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_060 0.0 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
2 Hb_002193_060 0.0604174068 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
3 Hb_001486_040 0.0716217133 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
4 Hb_000395_110 0.0766283918 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_005993_010 0.0802021786 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
6 Hb_000665_180 0.0823346623 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
7 Hb_005701_120 0.0830049005 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
8 Hb_000796_150 0.0891784095 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
9 Hb_010672_020 0.0909842211 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
10 Hb_000017_260 0.0924545486 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_000665_170 0.0927164441 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
12 Hb_003207_020 0.095725762 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
13 Hb_007416_070 0.0958165008 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
14 Hb_002110_100 0.0959601882 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_000007_090 0.0965624749 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
16 Hb_000197_020 0.0993098695 - - PREDICTED: protein RER1A [Jatropha curcas]
17 Hb_001619_060 0.0993197922 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
18 Hb_116349_120 0.0993339484 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000375_300 0.0996942277 - - PREDICTED: cyanate hydratase [Jatropha curcas]
20 Hb_000256_230 0.0998356732 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]

Gene co-expression network

sample Hb_185830_060 Hb_185830_060 Hb_002193_060 Hb_002193_060 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_003207_020 Hb_003207_020 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_010672_020 Hb_010672_020 Hb_000395_110--Hb_010672_020 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000395_110--Hb_000665_180 Hb_001609_040 Hb_001609_040 Hb_005993_010--Hb_001609_040 Hb_000152_600 Hb_000152_600 Hb_005993_010--Hb_000152_600 Hb_004055_120 Hb_004055_120 Hb_005993_010--Hb_004055_120 Hb_000069_640 Hb_000069_640 Hb_005993_010--Hb_000069_640 Hb_000705_230 Hb_000705_230 Hb_005993_010--Hb_000705_230 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_000665_180--Hb_002955_020 Hb_000665_180--Hb_002193_060 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_002110_100 Hb_002110_100 Hb_005701_120--Hb_002110_100 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39246 14.4231 26.6185 49.6994 6.9796 9.14803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9309 15.8578 13.6174 19.0504 29.7578

CAGE analysis