Hb_185830_090

Information

Type -
Description -
Location Contig185830: 66504-66968
Sequence    

Annotation

kegg
ID rcu:RCOM_0820380
description hypothetical protein
nr
ID XP_002525228.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGV9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0820380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_096878_010 0.0688820696 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
3 Hb_003050_170 0.0823907119 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000635_190 0.0827476209 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
5 Hb_004154_010 0.1038719674 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
6 Hb_133508_020 0.1074523667 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
7 Hb_006721_060 0.1175689574 - - RnaseH (mitochondrion) [Malus domestica]
8 Hb_014549_010 0.1180921366 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
9 Hb_015934_100 0.1309271953 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
10 Hb_005599_010 0.1313258914 - - Protein MLO, putative [Ricinus communis]
11 Hb_003878_020 0.1339330845 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
12 Hb_003712_010 0.1460461271 - - protein binding protein, putative [Ricinus communis]
13 Hb_001989_040 0.1486559506 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
14 Hb_000509_090 0.1514179503 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_006916_120 0.1524508821 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
16 Hb_000172_310 0.15399386 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
17 Hb_000975_090 0.1540132621 - - Zeamatin precursor, putative [Ricinus communis]
18 Hb_055147_020 0.1574833234 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
19 Hb_003226_060 0.1579618562 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_036602_010 0.1606725877 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_185830_090 Hb_185830_090 Hb_096878_010 Hb_096878_010 Hb_185830_090--Hb_096878_010 Hb_003050_170 Hb_003050_170 Hb_185830_090--Hb_003050_170 Hb_000635_190 Hb_000635_190 Hb_185830_090--Hb_000635_190 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_133508_020 Hb_133508_020 Hb_185830_090--Hb_133508_020 Hb_006721_060 Hb_006721_060 Hb_185830_090--Hb_006721_060 Hb_096878_010--Hb_000635_190 Hb_096878_010--Hb_006721_060 Hb_000172_310 Hb_000172_310 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_003050_170 Hb_096878_010--Hb_133508_020 Hb_003050_170--Hb_000635_190 Hb_003050_170--Hb_006721_060 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010 Hb_000635_190--Hb_006721_060 Hb_000635_190--Hb_000172_310 Hb_004096_140 Hb_004096_140 Hb_000635_190--Hb_004096_140 Hb_005599_010 Hb_005599_010 Hb_004154_010--Hb_005599_010 Hb_014549_010 Hb_014549_010 Hb_004154_010--Hb_014549_010 Hb_003226_060 Hb_003226_060 Hb_004154_010--Hb_003226_060 Hb_036602_010 Hb_036602_010 Hb_004154_010--Hb_036602_010 Hb_004154_010--Hb_003050_170 Hb_006916_120 Hb_006916_120 Hb_133508_020--Hb_006916_120 Hb_000152_590 Hb_000152_590 Hb_133508_020--Hb_000152_590 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111342 0.317083 0.319167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0997727 0

CAGE analysis