Hb_186115_010

Information

Type -
Description -
Location Contig186115: 111-1408
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186115_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_146361_020 0.0016197955 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
3 Hb_002903_030 0.010551456 - - polyphenol oxidase [Cydonia oblonga]
4 Hb_001862_020 0.0146722547 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
5 Hb_003407_020 0.0190609475 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_176232_040 0.0355335505 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003938_220 0.0373760067 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_012355_010 0.0488393487 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
9 Hb_005656_110 0.0516612207 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000248_090 0.0616295855 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
11 Hb_156683_010 0.0664572218 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
12 Hb_000028_540 0.0684235 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
13 Hb_002231_140 0.0705525922 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
14 Hb_004607_010 0.0908612765 - - -
15 Hb_006142_010 0.092105321 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
16 Hb_001863_050 0.0983661487 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
17 Hb_000115_180 0.1017719887 - - hypothetical protein RCOM_1308310 [Ricinus communis]
18 Hb_001357_370 0.1205532782 - - -
19 Hb_004968_110 0.1267137203 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
20 Hb_000023_040 0.1284401974 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_186115_010 Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_186115_010--Hb_146361_020 Hb_002903_030 Hb_002903_030 Hb_186115_010--Hb_002903_030 Hb_001862_020 Hb_001862_020 Hb_186115_010--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_186115_010--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_186115_010--Hb_176232_040 Hb_003938_220 Hb_003938_220 Hb_186115_010--Hb_003938_220 Hb_146361_020--Hb_002903_030 Hb_146361_020--Hb_001862_020 Hb_146361_020--Hb_003407_020 Hb_146361_020--Hb_176232_040 Hb_146361_020--Hb_003938_220 Hb_002903_030--Hb_001862_020 Hb_002903_030--Hb_003938_220 Hb_002903_030--Hb_003407_020 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_176232_040 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_012355_010 Hb_176232_040--Hb_012355_010 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540 Hb_003938_220--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_003938_220--Hb_000248_090 Hb_003938_220--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0135468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0256461 0

CAGE analysis