Hb_186495_010

Information

Type -
Description -
Location Contig186495: 3-422
Sequence    

Annotation

kegg
ID tcc:TCM_046051
description Phosphoprotein phosphatase
nr
ID XP_007099575.1
description Phosphoprotein phosphatase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID S1RWE9
description Phosphoprotein phosphatase OS=Theobroma cacao GN=TCM_046051 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186495_010 0.0 - - Phosphoprotein phosphatase [Theobroma cacao]
2 Hb_072153_010 0.1023884948 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
3 Hb_001016_040 0.1359876971 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
4 Hb_000069_630 0.1403448157 - - hypothetical protein [Hevea brasiliensis]
5 Hb_034688_030 0.1430194136 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
6 Hb_005056_120 0.1517130275 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000367_320 0.153324928 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000705_070 0.1542755792 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000720_060 0.1555767734 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_000028_580 0.1593381063 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
11 Hb_000563_410 0.1621840834 - - hypothetical protein JCGZ_18917 [Jatropha curcas]
12 Hb_003504_010 0.1648059737 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
13 Hb_001775_060 0.1657219723 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000028_550 0.1698436418 - - unknown [Medicago truncatula]
15 Hb_002627_010 0.1699580707 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
16 Hb_001322_010 0.1718009471 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
17 Hb_003126_120 0.1722923716 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
18 Hb_005396_030 0.1723227407 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002592_070 0.172331869 - - hypothetical protein VITISV_020993 [Vitis vinifera]
20 Hb_009225_070 0.174614978 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_186495_010 Hb_186495_010 Hb_072153_010 Hb_072153_010 Hb_186495_010--Hb_072153_010 Hb_001016_040 Hb_001016_040 Hb_186495_010--Hb_001016_040 Hb_000069_630 Hb_000069_630 Hb_186495_010--Hb_000069_630 Hb_034688_030 Hb_034688_030 Hb_186495_010--Hb_034688_030 Hb_005056_120 Hb_005056_120 Hb_186495_010--Hb_005056_120 Hb_000367_320 Hb_000367_320 Hb_186495_010--Hb_000367_320 Hb_005736_110 Hb_005736_110 Hb_072153_010--Hb_005736_110 Hb_072153_010--Hb_000367_320 Hb_072153_010--Hb_034688_030 Hb_072153_010--Hb_000069_630 Hb_000563_410 Hb_000563_410 Hb_072153_010--Hb_000563_410 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_103149_010 Hb_103149_010 Hb_001016_040--Hb_103149_010 Hb_009476_160 Hb_009476_160 Hb_001016_040--Hb_009476_160 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_000732_100 Hb_000732_100 Hb_001016_040--Hb_000732_100 Hb_000720_060 Hb_000720_060 Hb_000069_630--Hb_000720_060 Hb_000069_630--Hb_000563_410 Hb_135720_010 Hb_135720_010 Hb_000069_630--Hb_135720_010 Hb_000069_630--Hb_034688_030 Hb_001775_060 Hb_001775_060 Hb_000069_630--Hb_001775_060 Hb_003126_120 Hb_003126_120 Hb_034688_030--Hb_003126_120 Hb_002627_010 Hb_002627_010 Hb_034688_030--Hb_002627_010 Hb_034688_030--Hb_001775_060 Hb_002592_070 Hb_002592_070 Hb_034688_030--Hb_002592_070 Hb_002000_100 Hb_002000_100 Hb_034688_030--Hb_002000_100 Hb_000453_290 Hb_000453_290 Hb_034688_030--Hb_000453_290 Hb_002768_040 Hb_002768_040 Hb_005056_120--Hb_002768_040 Hb_006026_020 Hb_006026_020 Hb_005056_120--Hb_006026_020 Hb_005056_120--Hb_002627_010 Hb_009225_070 Hb_009225_070 Hb_005056_120--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_005056_120--Hb_001117_180 Hb_000149_020 Hb_000149_020 Hb_005056_120--Hb_000149_020 Hb_000367_320--Hb_003126_120 Hb_000367_320--Hb_005736_110 Hb_000367_320--Hb_034688_030 Hb_000367_320--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_000367_320--Hb_022693_090 Hb_001360_020 Hb_001360_020 Hb_000367_320--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199651 21.1148 3.51707 65.8993 0.450758 2.93809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363552 0.285552 1.62298 12.1902 10.9622

CAGE analysis