Hb_186647_010

Information

Type -
Description -
Location Contig186647: 5262-5734
Sequence    

Annotation

kegg
ID rcu:RCOM_0496720
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186647_010 0.0 - - -
2 Hb_155541_020 0.1410604916 - - -
3 Hb_105660_010 0.1767370483 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
4 Hb_001357_030 0.1777976669 - - hypothetical protein F383_04880 [Gossypium arboreum]
5 Hb_049915_010 0.1901163281 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
6 Hb_000302_100 0.192241093 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_011918_010 0.1934288242 - - hypothetical protein glysoja_041948 [Glycine soja]
8 Hb_020967_010 0.1966479285 - - -
9 Hb_066514_010 0.2042397071 - - hypothetical protein RCOM_0204720 [Ricinus communis]
10 Hb_007441_090 0.2098527598 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
11 Hb_000649_340 0.2098545881 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
12 Hb_000221_070 0.210717839 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017159_010 0.2118928871 - - -
14 Hb_008643_020 0.212810703 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
15 Hb_002173_030 0.2128109245 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
16 Hb_000733_090 0.2128391813 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
17 Hb_131684_010 0.2186922787 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008092_030 0.218924851 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
19 Hb_123301_010 0.2233702027 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002675_090 0.2287812153 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_186647_010 Hb_186647_010 Hb_155541_020 Hb_155541_020 Hb_186647_010--Hb_155541_020 Hb_105660_010 Hb_105660_010 Hb_186647_010--Hb_105660_010 Hb_001357_030 Hb_001357_030 Hb_186647_010--Hb_001357_030 Hb_049915_010 Hb_049915_010 Hb_186647_010--Hb_049915_010 Hb_000302_100 Hb_000302_100 Hb_186647_010--Hb_000302_100 Hb_011918_010 Hb_011918_010 Hb_186647_010--Hb_011918_010 Hb_003740_040 Hb_003740_040 Hb_155541_020--Hb_003740_040 Hb_155541_020--Hb_001357_030 Hb_155541_020--Hb_000302_100 Hb_007441_090 Hb_007441_090 Hb_155541_020--Hb_007441_090 Hb_066514_010 Hb_066514_010 Hb_155541_020--Hb_066514_010 Hb_020967_010 Hb_020967_010 Hb_105660_010--Hb_020967_010 Hb_004453_180 Hb_004453_180 Hb_105660_010--Hb_004453_180 Hb_105660_010--Hb_001357_030 Hb_000172_050 Hb_000172_050 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_160405_010 Hb_160405_010 Hb_001357_030--Hb_160405_010 Hb_001357_030--Hb_000302_100 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_001357_030--Hb_049915_010 Hb_049915_010--Hb_000733_090 Hb_008406_030 Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_011918_010--Hb_007575_090 Hb_011918_010--Hb_066514_010 Hb_184541_010 Hb_184541_010 Hb_011918_010--Hb_184541_010 Hb_002900_100 Hb_002900_100 Hb_011918_010--Hb_002900_100 Hb_004125_070 Hb_004125_070 Hb_011918_010--Hb_004125_070 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03053 13.1749 4.18362 29.6951 0.566116 3.75012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45844 2.57658 1.30039 3.64404 0.355224

CAGE analysis