Hb_186671_020

Information

Type -
Description -
Location Contig186671: 1776-6630
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18441: 5147-5321 , PASA_asmbl_18443: 6209-6334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186671_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_001796_010 0.0493840142 - - purine transporter, putative [Ricinus communis]
3 Hb_163950_060 0.0702835478 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_018609_010 0.0736344973 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005050_010 0.0736757886 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_000395_160 0.0742874573 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
7 Hb_000979_270 0.0743057106 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
8 Hb_004096_040 0.0744897024 - - cytochrome P450, putative [Ricinus communis]
9 Hb_008978_010 0.0818477493 - - transmembrane receptor, putative [Ricinus communis]
10 Hb_005687_020 0.0830190735 - - P66 protein [Hevea brasiliensis]
11 Hb_099085_010 0.0853894607 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_011980_020 0.085395359 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000215_120 0.0864522126 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
14 Hb_064583_010 0.092719129 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
15 Hb_000004_150 0.0928011463 - - hypothetical protein RCOM_1382630 [Ricinus communis]
16 Hb_000007_170 0.0928011463 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
17 Hb_000010_280 0.0928011463 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
18 Hb_000022_220 0.0928011463 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
19 Hb_000045_120 0.0928011463 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
20 Hb_000056_320 0.0928011463 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_186671_020 Hb_186671_020 Hb_001796_010 Hb_001796_010 Hb_186671_020--Hb_001796_010 Hb_163950_060 Hb_163950_060 Hb_186671_020--Hb_163950_060 Hb_018609_010 Hb_018609_010 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_000395_160 Hb_000395_160 Hb_186671_020--Hb_000395_160 Hb_000979_270 Hb_000979_270 Hb_186671_020--Hb_000979_270 Hb_001796_010--Hb_018609_010 Hb_099085_010 Hb_099085_010 Hb_001796_010--Hb_099085_010 Hb_064583_010 Hb_064583_010 Hb_001796_010--Hb_064583_010 Hb_011980_020 Hb_011980_020 Hb_001796_010--Hb_011980_020 Hb_001796_010--Hb_163950_060 Hb_163950_060--Hb_011980_020 Hb_000336_170 Hb_000336_170 Hb_163950_060--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_163950_060--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_163950_060--Hb_008978_010 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_018609_010--Hb_005050_010 Hb_018609_010--Hb_099085_010 Hb_018609_010--Hb_000979_270 Hb_018609_010--Hb_064583_010 Hb_005050_010--Hb_000979_270 Hb_005050_010--Hb_099085_010 Hb_000004_150 Hb_000004_150 Hb_005050_010--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_005050_010--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_005050_010--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_005050_010--Hb_000022_220 Hb_000395_160--Hb_000979_270 Hb_000395_160--Hb_005687_020 Hb_000395_160--Hb_000004_150 Hb_000395_160--Hb_000007_170 Hb_000395_160--Hb_000010_280 Hb_000395_160--Hb_000022_220 Hb_000979_270--Hb_000004_150 Hb_000979_270--Hb_000007_170 Hb_000979_270--Hb_000010_280 Hb_000979_270--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_000979_270--Hb_000045_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103096 249.704 0.761034 2.03437 0.0689724 0.0516884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32959 0

CAGE analysis