Hb_186725_010

Information

Type -
Description -
Location Contig186725: 107-559
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186725_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_031403_020 0.161878561 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
3 Hb_000243_200 0.1657294714 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005709_010 0.1660552384 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
5 Hb_000576_050 0.1840721494 - - Kinase superfamily protein [Theobroma cacao]
6 Hb_004055_170 0.1844193693 - - nucleosome assembly protein, putative [Ricinus communis]
7 Hb_005539_340 0.1870775456 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
8 Hb_011918_050 0.1872736465 - - -
9 Hb_000329_590 0.1892487842 - - catalytic, putative [Ricinus communis]
10 Hb_000211_120 0.1895617898 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
11 Hb_000116_030 0.1897705571 - - PREDICTED: protein GRIP [Jatropha curcas]
12 Hb_000359_120 0.1942202217 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001427_050 0.1950909623 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
14 Hb_000243_160 0.1956712805 - - glutaredoxin-1, grx1, putative [Ricinus communis]
15 Hb_000983_170 0.1959710606 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
16 Hb_032202_120 0.1967558189 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
17 Hb_006261_090 0.1972548617 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
18 Hb_011909_120 0.1978390794 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
19 Hb_009659_050 0.198183092 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
20 Hb_003638_130 0.1987934051 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]

Gene co-expression network

sample Hb_186725_010 Hb_186725_010 Hb_031403_020 Hb_031403_020 Hb_186725_010--Hb_031403_020 Hb_000243_200 Hb_000243_200 Hb_186725_010--Hb_000243_200 Hb_005709_010 Hb_005709_010 Hb_186725_010--Hb_005709_010 Hb_000576_050 Hb_000576_050 Hb_186725_010--Hb_000576_050 Hb_004055_170 Hb_004055_170 Hb_186725_010--Hb_004055_170 Hb_005539_340 Hb_005539_340 Hb_186725_010--Hb_005539_340 Hb_006261_090 Hb_006261_090 Hb_031403_020--Hb_006261_090 Hb_000710_010 Hb_000710_010 Hb_031403_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_031403_020--Hb_021576_040 Hb_002675_260 Hb_002675_260 Hb_031403_020--Hb_002675_260 Hb_000407_040 Hb_000407_040 Hb_031403_020--Hb_000407_040 Hb_002553_040 Hb_002553_040 Hb_031403_020--Hb_002553_040 Hb_032202_230 Hb_032202_230 Hb_000243_200--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000243_200--Hb_004951_070 Hb_000243_200--Hb_000576_050 Hb_007313_090 Hb_007313_090 Hb_000243_200--Hb_007313_090 Hb_001427_050 Hb_001427_050 Hb_000243_200--Hb_001427_050 Hb_000390_310 Hb_000390_310 Hb_000243_200--Hb_000390_310 Hb_005709_010--Hb_005539_340 Hb_000796_240 Hb_000796_240 Hb_005709_010--Hb_000796_240 Hb_000526_030 Hb_000526_030 Hb_005709_010--Hb_000526_030 Hb_037063_010 Hb_037063_010 Hb_005709_010--Hb_037063_010 Hb_005709_010--Hb_031403_020 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_003935_020 Hb_003935_020 Hb_004055_170--Hb_003935_020 Hb_009659_050 Hb_009659_050 Hb_004055_170--Hb_009659_050 Hb_004055_170--Hb_021576_040 Hb_002585_040 Hb_002585_040 Hb_004055_170--Hb_002585_040 Hb_002234_140 Hb_002234_140 Hb_004055_170--Hb_002234_140 Hb_000487_210 Hb_000487_210 Hb_004055_170--Hb_000487_210 Hb_000116_030 Hb_000116_030 Hb_005539_340--Hb_000116_030 Hb_003177_020 Hb_003177_020 Hb_005539_340--Hb_003177_020 Hb_000787_150 Hb_000787_150 Hb_005539_340--Hb_000787_150 Hb_005779_010 Hb_005779_010 Hb_005539_340--Hb_005779_010 Hb_002675_110 Hb_002675_110 Hb_005539_340--Hb_002675_110 Hb_000071_170 Hb_000071_170 Hb_005539_340--Hb_000071_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.819567 0.408176 0.541444 0.300678 0.25389 0.270436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.31731 0.373864 0 0.261826 0.227418

CAGE analysis