Hb_186765_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig186765: 238-714
Sequence    

Annotation

kegg
ID rcu:RCOM_0383560
description hypothetical protein
nr
ID XP_012066440.1
description PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23621 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105629453

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186765_010 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
2 Hb_001396_130 0.0662694493 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000377_130 0.0665466871 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
4 Hb_011519_040 0.0671345273 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
5 Hb_006755_030 0.0854659615 - - BURP domain-containing protein, putative [Theobroma cacao]
6 Hb_001097_140 0.0988640199 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002925_060 0.1000819076 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
8 Hb_044380_010 0.1046268212 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
9 Hb_080797_010 0.1053674255 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
10 Hb_001408_200 0.1080246039 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
11 Hb_001976_100 0.108369997 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
12 Hb_000176_050 0.1121757256 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
13 Hb_091236_010 0.1152265315 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
14 Hb_000122_230 0.1187963614 - - laccase, putative [Ricinus communis]
15 Hb_000959_110 0.1190284286 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
16 Hb_000620_050 0.1201792707 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
17 Hb_004930_020 0.1238654326 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
18 Hb_008001_030 0.1254602138 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
19 Hb_184074_010 0.1259896617 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
20 Hb_006920_020 0.1262826395 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_186765_010 Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_000377_130 Hb_000377_130 Hb_186765_010--Hb_000377_130 Hb_011519_040 Hb_011519_040 Hb_186765_010--Hb_011519_040 Hb_006755_030 Hb_006755_030 Hb_186765_010--Hb_006755_030 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_002925_060 Hb_002925_060 Hb_186765_010--Hb_002925_060 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_001396_130--Hb_000377_130 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240 Hb_000377_130--Hb_006755_030 Hb_000377_130--Hb_011519_040 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_000377_130--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_000377_130--Hb_000620_050 Hb_011519_040--Hb_006755_030 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_006755_030--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030 Hb_080797_010 Hb_080797_010 Hb_001097_140--Hb_080797_010 Hb_001097_140--Hb_000207_240 Hb_003714_030 Hb_003714_030 Hb_001097_140--Hb_003714_030 Hb_001269_540 Hb_001269_540 Hb_001097_140--Hb_001269_540 Hb_004837_080 Hb_004837_080 Hb_001097_140--Hb_004837_080 Hb_002925_060--Hb_001408_200 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.310888 0.245468 3.04265 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.428681 3.16297

CAGE analysis