Hb_186857_010

Information

Type -
Description -
Location Contig186857: 4343-8684
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18451: 4505-5218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186857_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_003001_040 0.1532075578 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
3 Hb_002092_110 0.1589836932 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
4 Hb_004355_040 0.1628836215 - - epoxide hydrolase, putative [Ricinus communis]
5 Hb_000062_030 0.1632398689 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
6 Hb_000010_270 0.1707114822 - - PREDICTED: vignain [Jatropha curcas]
7 Hb_009485_020 0.1712852942 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
8 Hb_000630_030 0.171684181 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
9 Hb_003894_040 0.1753909547 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_001623_110 0.1793036091 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
11 Hb_006508_030 0.1807211175 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
12 Hb_000260_370 0.1827036632 - - protein phosphatase-1, putative [Ricinus communis]
13 Hb_000365_330 0.1841706772 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000347_270 0.1855625006 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
15 Hb_001153_050 0.1879131764 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
16 Hb_013818_030 0.1880978594 - - conserved hypothetical protein [Ricinus communis]
17 Hb_018202_050 0.1888631165 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
18 Hb_001191_130 0.18917959 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]
19 Hb_000413_070 0.1893074094 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000580_030 0.18954448 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_186857_010 Hb_186857_010 Hb_003001_040 Hb_003001_040 Hb_186857_010--Hb_003001_040 Hb_002092_110 Hb_002092_110 Hb_186857_010--Hb_002092_110 Hb_004355_040 Hb_004355_040 Hb_186857_010--Hb_004355_040 Hb_000062_030 Hb_000062_030 Hb_186857_010--Hb_000062_030 Hb_000010_270 Hb_000010_270 Hb_186857_010--Hb_000010_270 Hb_009485_020 Hb_009485_020 Hb_186857_010--Hb_009485_020 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_024698_010 Hb_024698_010 Hb_003001_040--Hb_024698_010 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_097646_010 Hb_097646_010 Hb_003001_040--Hb_097646_010 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000347_270 Hb_000347_270 Hb_002092_110--Hb_000347_270 Hb_000853_260 Hb_000853_260 Hb_002092_110--Hb_000853_260 Hb_003104_040 Hb_003104_040 Hb_002092_110--Hb_003104_040 Hb_001153_050 Hb_001153_050 Hb_002092_110--Hb_001153_050 Hb_002805_060 Hb_002805_060 Hb_002092_110--Hb_002805_060 Hb_000156_160 Hb_000156_160 Hb_002092_110--Hb_000156_160 Hb_000630_030 Hb_000630_030 Hb_004355_040--Hb_000630_030 Hb_000580_030 Hb_000580_030 Hb_004355_040--Hb_000580_030 Hb_000318_040 Hb_000318_040 Hb_004355_040--Hb_000318_040 Hb_000413_070 Hb_000413_070 Hb_004355_040--Hb_000413_070 Hb_001103_090 Hb_001103_090 Hb_004355_040--Hb_001103_090 Hb_001558_040 Hb_001558_040 Hb_004355_040--Hb_001558_040 Hb_000505_110 Hb_000505_110 Hb_000062_030--Hb_000505_110 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_008147_050 Hb_008147_050 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_000010_270--Hb_001153_050 Hb_073973_150 Hb_073973_150 Hb_000010_270--Hb_073973_150 Hb_002475_040 Hb_002475_040 Hb_000010_270--Hb_002475_040 Hb_019641_030 Hb_019641_030 Hb_000010_270--Hb_019641_030 Hb_005323_010 Hb_005323_010 Hb_000010_270--Hb_005323_010 Hb_000010_270--Hb_004355_040 Hb_003858_040 Hb_003858_040 Hb_009485_020--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_009485_020--Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1938 3.63694 2.51584 5.37988 5.35422 1.48304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.654196 0.494124 0.272241 1.66506 2.07972

CAGE analysis