Hb_186995_010

Information

Type -
Description -
Location Contig186995: 496-1370
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01755g
description hypothetical protein
nr
ID XP_006376635.1
description hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FYQ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01755g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186995_010 0.0 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
2 Hb_167206_010 0.0637378836 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
3 Hb_012496_020 0.0857704859 - - receptor serine/threonine kinase, putative [Ricinus communis]
4 Hb_001277_370 0.1009971299 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
5 Hb_004553_040 0.1035458081 - - PREDICTED: protein YLS9-like [Jatropha curcas]
6 Hb_000319_010 0.1061257556 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
7 Hb_006873_010 0.1159556212 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_003060_150 0.1204955135 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_018563_010 0.1228374242 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_182167_010 0.1241428443 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
11 Hb_011028_040 0.1266454226 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_000438_200 0.1328754129 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
13 Hb_000418_060 0.1332442938 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_070613_010 0.1347817714 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_001221_070 0.1366820617 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
16 Hb_002374_030 0.1370771723 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
17 Hb_007632_230 0.137921036 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
18 Hb_002301_340 0.1382793995 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
19 Hb_006002_020 0.1447416343 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
20 Hb_009252_090 0.1465925003 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_186995_010 Hb_186995_010 Hb_167206_010 Hb_167206_010 Hb_186995_010--Hb_167206_010 Hb_012496_020 Hb_012496_020 Hb_186995_010--Hb_012496_020 Hb_001277_370 Hb_001277_370 Hb_186995_010--Hb_001277_370 Hb_004553_040 Hb_004553_040 Hb_186995_010--Hb_004553_040 Hb_000319_010 Hb_000319_010 Hb_186995_010--Hb_000319_010 Hb_006873_010 Hb_006873_010 Hb_186995_010--Hb_006873_010 Hb_167206_010--Hb_004553_040 Hb_167206_010--Hb_001277_370 Hb_018563_010 Hb_018563_010 Hb_167206_010--Hb_018563_010 Hb_167206_010--Hb_012496_020 Hb_167206_010--Hb_000319_010 Hb_000438_200 Hb_000438_200 Hb_012496_020--Hb_000438_200 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_115962_010 Hb_115962_010 Hb_012496_020--Hb_115962_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_001221_070 Hb_001221_070 Hb_001277_370--Hb_001221_070 Hb_007632_230 Hb_007632_230 Hb_001277_370--Hb_007632_230 Hb_001277_370--Hb_004553_040 Hb_007357_010 Hb_007357_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_004553_040--Hb_001221_070 Hb_004553_040--Hb_007632_230 Hb_004553_040--Hb_000319_010 Hb_004553_040--Hb_018563_010 Hb_000319_010--Hb_007632_230 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_004316_020 Hb_004316_020 Hb_006873_010--Hb_004316_020 Hb_004314_020 Hb_004314_020 Hb_006873_010--Hb_004314_020 Hb_011028_040 Hb_011028_040 Hb_006873_010--Hb_011028_040 Hb_006873_010--Hb_018563_010 Hb_009252_090 Hb_009252_090 Hb_006873_010--Hb_009252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.901214 1.13434 0.76586 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.233033

CAGE analysis