Hb_187211_010

Information

Type -
Description -
Location Contig187211: 6814-10494
Sequence    

Annotation

kegg
ID rcu:RCOM_0827440
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012065491.1
description PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
swissprot
ID O64882
description Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1
trembl
ID A0A067L4M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16703 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187211_010 0.0 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
2 Hb_001377_480 0.0743230043 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
3 Hb_001789_010 0.1153995786 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
4 Hb_001101_020 0.1209306986 - - hypothetical protein RCOM_0615680 [Ricinus communis]
5 Hb_111985_120 0.1228210444 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
6 Hb_000625_130 0.1275591402 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
7 Hb_142522_030 0.1322524226 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
8 Hb_140049_060 0.1447269075 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
9 Hb_069151_010 0.1459135007 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
10 Hb_000101_370 0.1486252562 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
11 Hb_004055_080 0.1517419024 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_003480_010 0.1523064496 - - cytochrome P450 family protein [Populus trichocarpa]
13 Hb_027242_010 0.1553051428 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
14 Hb_111693_010 0.1564827152 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
15 Hb_000057_210 0.156804896 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
16 Hb_000029_420 0.1574251764 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
17 Hb_000917_330 0.1627308579 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
18 Hb_000194_080 0.1658675988 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
19 Hb_002081_220 0.1688942828 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
20 Hb_000815_280 0.1697802125 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_187211_010 Hb_187211_010 Hb_001377_480 Hb_001377_480 Hb_187211_010--Hb_001377_480 Hb_001789_010 Hb_001789_010 Hb_187211_010--Hb_001789_010 Hb_001101_020 Hb_001101_020 Hb_187211_010--Hb_001101_020 Hb_111985_120 Hb_111985_120 Hb_187211_010--Hb_111985_120 Hb_000625_130 Hb_000625_130 Hb_187211_010--Hb_000625_130 Hb_142522_030 Hb_142522_030 Hb_187211_010--Hb_142522_030 Hb_001377_480--Hb_111985_120 Hb_001377_480--Hb_000625_130 Hb_001377_480--Hb_001789_010 Hb_001377_480--Hb_001101_020 Hb_001377_480--Hb_142522_030 Hb_001789_010--Hb_111985_120 Hb_111693_010 Hb_111693_010 Hb_001789_010--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_001789_010--Hb_000220_170 Hb_002553_100 Hb_002553_100 Hb_001789_010--Hb_002553_100 Hb_001101_020--Hb_142522_030 Hb_001101_020--Hb_111985_120 Hb_001101_020--Hb_001789_010 Hb_129204_050 Hb_129204_050 Hb_001101_020--Hb_129204_050 Hb_111985_120--Hb_111693_010 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_000917_330 Hb_000917_330 Hb_000625_130--Hb_000917_330 Hb_001936_030 Hb_001936_030 Hb_000625_130--Hb_001936_030 Hb_000625_130--Hb_142522_030 Hb_025469_040 Hb_025469_040 Hb_000625_130--Hb_025469_040 Hb_003166_020 Hb_003166_020 Hb_000625_130--Hb_003166_020 Hb_142522_030--Hb_000917_330 Hb_131864_020 Hb_131864_020 Hb_142522_030--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_142522_030--Hb_007044_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155779 1.51009 0.487811 0 0.0118729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.4011 0

CAGE analysis