Hb_187236_010

Information

Type -
Description -
Location Contig187236: 1-343
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187236_010 0.0 - - -
2 Hb_000248_110 0.204308564 - - hypothetical protein VITISV_037580 [Vitis vinifera]
3 Hb_090390_010 0.205998407 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
4 Hb_014361_040 0.2092840778 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_005545_110 0.2176741134 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
6 Hb_000080_100 0.2178829548 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
7 Hb_001269_580 0.2185573752 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
8 Hb_061054_010 0.2192518644 - - hypothetical protein JCGZ_01675 [Jatropha curcas]
9 Hb_007802_010 0.2197226874 - - Receptor like protein 6, putative [Theobroma cacao]
10 Hb_001728_130 0.2199014742 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_026198_020 0.2278955559 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
12 Hb_000392_490 0.2281618471 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
13 Hb_001221_470 0.2291356508 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
14 Hb_152980_020 0.2306268963 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
15 Hb_116194_010 0.2323285201 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_006916_140 0.2326095416 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
17 Hb_164117_010 0.2333081667 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
18 Hb_002750_040 0.2349735584 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
19 Hb_000245_100 0.2358383249 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
20 Hb_002374_520 0.2362014224 - - early nodulin 8 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_187236_010 Hb_187236_010 Hb_000248_110 Hb_000248_110 Hb_187236_010--Hb_000248_110 Hb_090390_010 Hb_090390_010 Hb_187236_010--Hb_090390_010 Hb_014361_040 Hb_014361_040 Hb_187236_010--Hb_014361_040 Hb_005545_110 Hb_005545_110 Hb_187236_010--Hb_005545_110 Hb_000080_100 Hb_000080_100 Hb_187236_010--Hb_000080_100 Hb_001269_580 Hb_001269_580 Hb_187236_010--Hb_001269_580 Hb_000248_110--Hb_000080_100 Hb_001520_030 Hb_001520_030 Hb_000248_110--Hb_001520_030 Hb_000152_520 Hb_000152_520 Hb_000248_110--Hb_000152_520 Hb_003126_120 Hb_003126_120 Hb_000248_110--Hb_003126_120 Hb_017434_080 Hb_017434_080 Hb_000248_110--Hb_017434_080 Hb_026198_020 Hb_026198_020 Hb_090390_010--Hb_026198_020 Hb_094437_030 Hb_094437_030 Hb_090390_010--Hb_094437_030 Hb_002374_510 Hb_002374_510 Hb_090390_010--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_090390_010--Hb_009122_010 Hb_001396_130 Hb_001396_130 Hb_090390_010--Hb_001396_130 Hb_003983_010 Hb_003983_010 Hb_090390_010--Hb_003983_010 Hb_000162_070 Hb_000162_070 Hb_014361_040--Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_014361_040--Hb_026144_040 Hb_007237_080 Hb_007237_080 Hb_014361_040--Hb_007237_080 Hb_002097_080 Hb_002097_080 Hb_014361_040--Hb_002097_080 Hb_000045_080 Hb_000045_080 Hb_014361_040--Hb_000045_080 Hb_001728_130 Hb_001728_130 Hb_014361_040--Hb_001728_130 Hb_152980_020 Hb_152980_020 Hb_005545_110--Hb_152980_020 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_002750_040 Hb_002750_040 Hb_005545_110--Hb_002750_040 Hb_031224_010 Hb_031224_010 Hb_005545_110--Hb_031224_010 Hb_001404_070 Hb_001404_070 Hb_005545_110--Hb_001404_070 Hb_005545_110--Hb_001728_130 Hb_000009_250 Hb_000009_250 Hb_000080_100--Hb_000009_250 Hb_011224_150 Hb_011224_150 Hb_000080_100--Hb_011224_150 Hb_001976_100 Hb_001976_100 Hb_000080_100--Hb_001976_100 Hb_002171_050 Hb_002171_050 Hb_000080_100--Hb_002171_050 Hb_004930_020 Hb_004930_020 Hb_000080_100--Hb_004930_020 Hb_001019_030 Hb_001019_030 Hb_000080_100--Hb_001019_030 Hb_002890_110 Hb_002890_110 Hb_001269_580--Hb_002890_110 Hb_001269_580--Hb_009122_010 Hb_001269_580--Hb_002750_040 Hb_004117_020 Hb_004117_020 Hb_001269_580--Hb_004117_020 Hb_174541_030 Hb_174541_030 Hb_001269_580--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_001269_580--Hb_002203_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869321 1.10204 0.262853 4.48097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.50417 2.56355

CAGE analysis