Hb_187418_010

Information

Type -
Description -
Location Contig187418: 2240-2614
Sequence    

Annotation

kegg
ID cit:102612155
description TMV resistance protein N-like
nr
ID XP_006495387.1
description PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID A0A067D5Q8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0397312mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187418_010 0.0 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
2 Hb_020479_010 0.0024491247 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
3 Hb_001948_060 0.0036899353 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
4 Hb_001504_200 0.0046579576 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
5 Hb_003266_110 0.0065126396 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004712_120 0.0069883556 - - Pectinesterase U1 precursor, putative [Ricinus communis]
7 Hb_003549_110 0.0071804904 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
8 Hb_137288_010 0.0074419605 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
9 Hb_000003_800 0.0083939463 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001322_060 0.0084115093 - - unnamed protein product [Vitis vinifera]
11 Hb_000413_090 0.0147916345 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
12 Hb_001728_090 0.0151195444 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
13 Hb_002986_150 0.0175069224 - - hypothetical protein glysoja_022060 [Glycine soja]
14 Hb_001571_070 0.0179721326 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
15 Hb_002391_260 0.0188083239 - - hypothetical protein RCOM_0017280 [Ricinus communis]
16 Hb_001817_200 0.020687523 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
17 Hb_004994_270 0.0268654262 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
18 Hb_002259_100 0.0276955426 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
19 Hb_014549_030 0.0276964612 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000042_410 0.0282162042 - - Patatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_187418_010 Hb_187418_010 Hb_020479_010 Hb_020479_010 Hb_187418_010--Hb_020479_010 Hb_001948_060 Hb_001948_060 Hb_187418_010--Hb_001948_060 Hb_001504_200 Hb_001504_200 Hb_187418_010--Hb_001504_200 Hb_003266_110 Hb_003266_110 Hb_187418_010--Hb_003266_110 Hb_004712_120 Hb_004712_120 Hb_187418_010--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_187418_010--Hb_003549_110 Hb_020479_010--Hb_001948_060 Hb_020479_010--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_020479_010--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_020479_010--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_020479_010--Hb_001322_060 Hb_001948_060--Hb_003266_110 Hb_001948_060--Hb_137288_010 Hb_001948_060--Hb_000003_800 Hb_001948_060--Hb_001322_060 Hb_001504_200--Hb_004712_120 Hb_001504_200--Hb_003549_110 Hb_001504_200--Hb_020479_010 Hb_001504_200--Hb_001948_060 Hb_001728_090 Hb_001728_090 Hb_001504_200--Hb_001728_090 Hb_003266_110--Hb_137288_010 Hb_003266_110--Hb_000003_800 Hb_003266_110--Hb_001322_060 Hb_004712_120--Hb_003549_110 Hb_004712_120--Hb_001728_090 Hb_004712_120--Hb_020479_010 Hb_002986_150 Hb_002986_150 Hb_004712_120--Hb_002986_150 Hb_003549_110--Hb_001728_090 Hb_003549_110--Hb_020479_010 Hb_003549_110--Hb_002986_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.31939 0.605381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis