Hb_187620_010

Information

Type -
Description -
Location Contig187620: 1-267
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02200g
description POPTRDRAFT_216579; hypothetical protein
nr
ID XP_012066188.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187620_010 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
2 Hb_010136_020 0.1110116176 - - stress-induced receptor-like kinase [Medicago truncatula]
3 Hb_002006_110 0.1112475037 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
4 Hb_001677_140 0.1134090458 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
5 Hb_036754_040 0.1167123627 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_001511_200 0.122157055 - - Embryonic abundant protein, putative [Ricinus communis]
7 Hb_128851_020 0.124807727 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_184752_010 0.1259332201 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
9 Hb_019978_010 0.1285862625 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
10 Hb_034581_010 0.1292473055 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
11 Hb_004724_290 0.1293890826 transcription factor TF Family: NAC -
12 Hb_110356_010 0.1313325423 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
13 Hb_006916_220 0.1351630559 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
14 Hb_005248_020 0.1389624173 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
15 Hb_002548_030 0.1398979648 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
16 Hb_004724_310 0.140899285 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_000359_230 0.1411377915 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
18 Hb_099188_010 0.1443097504 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_000731_020 0.1475230308 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
20 Hb_157957_010 0.1501674203 - - hypothetical protein JCGZ_10722 [Jatropha curcas]

Gene co-expression network

sample Hb_187620_010 Hb_187620_010 Hb_010136_020 Hb_010136_020 Hb_187620_010--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_187620_010--Hb_002006_110 Hb_001677_140 Hb_001677_140 Hb_187620_010--Hb_001677_140 Hb_036754_040 Hb_036754_040 Hb_187620_010--Hb_036754_040 Hb_001511_200 Hb_001511_200 Hb_187620_010--Hb_001511_200 Hb_128851_020 Hb_128851_020 Hb_187620_010--Hb_128851_020 Hb_010136_020--Hb_002006_110 Hb_010136_020--Hb_036754_040 Hb_010136_020--Hb_001677_140 Hb_019978_010 Hb_019978_010 Hb_010136_020--Hb_019978_010 Hb_184752_010 Hb_184752_010 Hb_010136_020--Hb_184752_010 Hb_034581_010 Hb_034581_010 Hb_010136_020--Hb_034581_010 Hb_002006_110--Hb_036754_040 Hb_002006_110--Hb_001677_140 Hb_002006_110--Hb_019978_010 Hb_002006_110--Hb_184752_010 Hb_004724_290 Hb_004724_290 Hb_002006_110--Hb_004724_290 Hb_001677_140--Hb_128851_020 Hb_110356_010 Hb_110356_010 Hb_001677_140--Hb_110356_010 Hb_001677_140--Hb_036754_040 Hb_001677_140--Hb_034581_010 Hb_036754_040--Hb_034581_010 Hb_036754_040--Hb_019978_010 Hb_036754_040--Hb_110356_010 Hb_001511_200--Hb_128851_020 Hb_001511_200--Hb_001677_140 Hb_001511_200--Hb_010136_020 Hb_001511_200--Hb_002006_110 Hb_099188_010 Hb_099188_010 Hb_001511_200--Hb_099188_010 Hb_000668_220 Hb_000668_220 Hb_001511_200--Hb_000668_220 Hb_128851_020--Hb_099188_010 Hb_128851_020--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_128851_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_128851_020--Hb_000359_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.2819 5.10866 4.96089 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0 0 0

CAGE analysis