Hb_187661_010

Information

Type -
Description -
Location Contig187661: 108-416
Sequence    

Annotation

kegg
ID rcu:RCOM_1592330
description signal peptidase I, putative (EC:3.4.21.89)
nr
ID XP_012071721.1
description PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O04348
description Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2
trembl
ID A0A067L1P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04335 PE=3 SV=1
Gene Ontology
ID GO:0016020
description thylakoidal processing peptidase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187661_010 0.0 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
2 Hb_008891_020 0.0492168669 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
3 Hb_056305_010 0.0492967212 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_002257_070 0.049637429 - - hypothetical protein, partial [Pseudomonas fluorescens]
5 Hb_003017_010 0.0506131938 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
6 Hb_003985_020 0.0533208039 - - -
7 Hb_012587_010 0.0572665539 - - -
8 Hb_066620_010 0.0649479153 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
9 Hb_044767_010 0.0678204684 - - -
10 Hb_001887_030 0.0708527895 - - -
11 Hb_000934_220 0.0907600165 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
12 Hb_000188_090 0.0964851321 - - JHL22C18.10 [Jatropha curcas]
13 Hb_010222_010 0.0997598246 - - -
14 Hb_005671_030 0.11409805 - - -
15 Hb_003556_020 0.1471219412 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
16 Hb_002463_080 0.1503398388 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000574_020 0.1580399614 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_142068_020 0.1598786973 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
19 Hb_000454_020 0.1610462949 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_006275_030 0.1610782073 - - -

Gene co-expression network

sample Hb_187661_010 Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_187661_010--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_187661_010--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_187661_010--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_187661_010--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_187661_010--Hb_003985_020 Hb_012587_010 Hb_012587_010 Hb_187661_010--Hb_012587_010 Hb_008891_020--Hb_056305_010 Hb_008891_020--Hb_002257_070 Hb_008891_020--Hb_003017_010 Hb_008891_020--Hb_003985_020 Hb_008891_020--Hb_012587_010 Hb_066620_010 Hb_066620_010 Hb_008891_020--Hb_066620_010 Hb_056305_010--Hb_002257_070 Hb_056305_010--Hb_003017_010 Hb_056305_010--Hb_003985_020 Hb_056305_010--Hb_012587_010 Hb_056305_010--Hb_066620_010 Hb_002257_070--Hb_003017_010 Hb_002257_070--Hb_003985_020 Hb_002257_070--Hb_012587_010 Hb_002257_070--Hb_066620_010 Hb_003017_010--Hb_003985_020 Hb_003017_010--Hb_012587_010 Hb_003017_010--Hb_066620_010 Hb_003985_020--Hb_012587_010 Hb_003985_020--Hb_066620_010 Hb_012587_010--Hb_066620_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199156 0 0 0 0 0.137788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis