Hb_187679_010

Information

Type -
Description -
Location Contig187679: 9-443
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18502: 335-584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187679_010 0.0 - - -
2 Hb_001159_130 0.0877170197 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
3 Hb_155159_020 0.0893817702 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
4 Hb_001936_010 0.0899173473 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
5 Hb_027380_130 0.094257043 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
6 Hb_000300_500 0.094393462 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
7 Hb_084646_010 0.0965245772 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
8 Hb_002217_240 0.0968601261 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
9 Hb_000608_050 0.097534234 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
10 Hb_002754_010 0.097970939 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_002298_030 0.0989006125 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
12 Hb_001300_150 0.0995448441 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
13 Hb_000783_010 0.1007382167 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
14 Hb_000603_150 0.1010863673 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
15 Hb_021068_040 0.1017904101 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
16 Hb_000787_020 0.1021587365 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_008226_060 0.1022196453 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
18 Hb_005051_020 0.1024229381 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
19 Hb_092337_010 0.10243286 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
20 Hb_000926_090 0.1054568593 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_187679_010 Hb_187679_010 Hb_001159_130 Hb_001159_130 Hb_187679_010--Hb_001159_130 Hb_155159_020 Hb_155159_020 Hb_187679_010--Hb_155159_020 Hb_001936_010 Hb_001936_010 Hb_187679_010--Hb_001936_010 Hb_027380_130 Hb_027380_130 Hb_187679_010--Hb_027380_130 Hb_000300_500 Hb_000300_500 Hb_187679_010--Hb_000300_500 Hb_084646_010 Hb_084646_010 Hb_187679_010--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_155159_020--Hb_084646_010 Hb_155159_020--Hb_000116_270 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_001936_010--Hb_001159_130 Hb_092337_010 Hb_092337_010 Hb_001936_010--Hb_092337_010 Hb_094836_010 Hb_094836_010 Hb_001936_010--Hb_094836_010 Hb_001936_010--Hb_000116_270 Hb_001799_210 Hb_001799_210 Hb_001936_010--Hb_001799_210 Hb_002620_020 Hb_002620_020 Hb_001936_010--Hb_002620_020 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_006455_120 Hb_006455_120 Hb_000300_500--Hb_006455_120 Hb_000720_040 Hb_000720_040 Hb_000300_500--Hb_000720_040 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_000300_500--Hb_001159_130 Hb_000300_500--Hb_000603_150 Hb_084646_010--Hb_000116_270 Hb_001016_120 Hb_001016_120 Hb_084646_010--Hb_001016_120 Hb_084646_010--Hb_000787_020 Hb_084646_010--Hb_027380_130 Hb_084646_010--Hb_001159_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7401 10.9916 11.7285 21.3313 7.12933 11.7199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3848 16.7478 19.831 11.1239 4.61791

CAGE analysis