Hb_188126_010

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig188126: 49839-67549
Sequence    

Annotation

kegg
ID rcu:RCOM_1397010
description hypothetical protein
nr
ID XP_012072836.1
description PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID B9S335
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1397010 PE=4 SV=1
Gene Ontology
ID GO:0046872
description lysine-specific demethylase jmj25-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18570: 33644-67814 , PASA_asmbl_18571: 49956-50380
cDNA
(Sanger)
(ID:Location)		 005_N22.ab1: 67089-67812 , 032_J06.ab1: 67150-67812

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188126_010 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
2 Hb_000005_190 0.0667275883 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
3 Hb_001062_010 0.0789294691 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
4 Hb_000661_030 0.0798688159 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
5 Hb_001655_060 0.0842628569 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
6 Hb_007805_010 0.0883147431 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
7 Hb_009976_020 0.0886015544 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
8 Hb_127552_040 0.0916108729 - - Uncharacterized protein L484_000643 [Morus notabilis]
9 Hb_001449_040 0.0926989275 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
10 Hb_005271_190 0.0930012665 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_000740_100 0.094008052 - - calpain, putative [Ricinus communis]
12 Hb_000815_170 0.0940820483 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
13 Hb_005488_150 0.0942468652 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000446_120 0.0957751857 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
15 Hb_001343_040 0.0957954667 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
16 Hb_011310_160 0.0958645016 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
17 Hb_000788_070 0.0960234679 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
18 Hb_000183_020 0.0974970061 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_008024_030 0.0980000493 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
20 Hb_000207_180 0.0980191019 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]

Gene co-expression network

sample Hb_188126_010 Hb_188126_010 Hb_000005_190 Hb_000005_190 Hb_188126_010--Hb_000005_190 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_000661_030 Hb_000661_030 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_007805_010 Hb_007805_010 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_010710_070 Hb_010710_070 Hb_000005_190--Hb_010710_070 Hb_012733_030 Hb_012733_030 Hb_000005_190--Hb_012733_030 Hb_003544_140 Hb_003544_140 Hb_000005_190--Hb_003544_140 Hb_002095_010 Hb_002095_010 Hb_000005_190--Hb_002095_010 Hb_000207_180 Hb_000207_180 Hb_000005_190--Hb_000207_180 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020 Hb_000679_020 Hb_000679_020 Hb_000661_030--Hb_000679_020 Hb_001259_020 Hb_001259_020 Hb_000661_030--Hb_001259_020 Hb_000027_190 Hb_000027_190 Hb_000661_030--Hb_000027_190 Hb_000815_170 Hb_000815_170 Hb_000661_030--Hb_000815_170 Hb_000906_100 Hb_000906_100 Hb_000661_030--Hb_000906_100 Hb_005271_190 Hb_005271_190 Hb_001655_060--Hb_005271_190 Hb_000788_070 Hb_000788_070 Hb_001655_060--Hb_000788_070 Hb_000740_100 Hb_000740_100 Hb_001655_060--Hb_000740_100 Hb_001655_060--Hb_001062_010 Hb_001789_040 Hb_001789_040 Hb_001655_060--Hb_001789_040 Hb_002551_070 Hb_002551_070 Hb_007805_010--Hb_002551_070 Hb_002974_060 Hb_002974_060 Hb_007805_010--Hb_002974_060 Hb_005679_050 Hb_005679_050 Hb_007805_010--Hb_005679_050 Hb_000470_080 Hb_000470_080 Hb_007805_010--Hb_000470_080 Hb_000236_310 Hb_000236_310 Hb_007805_010--Hb_000236_310 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_012760_100 Hb_012760_100 Hb_009976_020--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_003734_010 Hb_003734_010 Hb_009976_020--Hb_003734_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5856 10.4583 7.20166 6.8021 16.6598 19.2555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33226 7.56574 9.75974 18.3795 19.5553

CAGE analysis