Hb_188168_010

Information

Type -
Description -
Location Contig188168: 10788-11891
Sequence    

Annotation

kegg
ID rcu:RCOM_1045410
description Arylacetamide deacetylase, putative
nr
ID XP_002523490.1
description Arylacetamide deacetylase, putative [Ricinus communis]
swissprot
ID Q9LT10
description Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1
trembl
ID B9SBX1
description Arylacetamide deacetylase, putative OS=Ricinus communis GN=RCOM_1045410 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188168_010 0.0 - - Arylacetamide deacetylase, putative [Ricinus communis]
2 Hb_010452_030 0.0297569992 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
3 Hb_000045_270 0.0297589601 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001100_020 0.0298446443 - - -
5 Hb_122911_010 0.030552433 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
6 Hb_002400_110 0.0307389464 - - conserved hypothetical protein [Ricinus communis]
7 Hb_072149_010 0.0308014068 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
8 Hb_004944_030 0.0312886559 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_001136_140 0.0315649543 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
10 Hb_002342_040 0.032967188 - - FERONIA, partial [Arabis alpina]
11 Hb_001903_020 0.0369453495 - - -
12 Hb_005426_010 0.0386062432 - - polyprotein [Oryza australiensis]
13 Hb_007592_010 0.038704729 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
14 Hb_008092_010 0.040112169 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
15 Hb_003702_020 0.0404112794 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
16 Hb_000370_050 0.0404353384 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_187024_020 0.0407128328 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
18 Hb_039814_010 0.0420023704 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
19 Hb_042239_010 0.0434467264 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_048653_010 0.0443750861 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_188168_010 Hb_188168_010 Hb_010452_030 Hb_010452_030 Hb_188168_010--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_188168_010--Hb_000045_270 Hb_001100_020 Hb_001100_020 Hb_188168_010--Hb_001100_020 Hb_122911_010 Hb_122911_010 Hb_188168_010--Hb_122911_010 Hb_002400_110 Hb_002400_110 Hb_188168_010--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_188168_010--Hb_072149_010 Hb_010452_030--Hb_001100_020 Hb_010452_030--Hb_000045_270 Hb_010452_030--Hb_002400_110 Hb_010452_030--Hb_072149_010 Hb_010452_030--Hb_122911_010 Hb_004944_030 Hb_004944_030 Hb_010452_030--Hb_004944_030 Hb_000045_270--Hb_001100_020 Hb_000045_270--Hb_122911_010 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_000045_270--Hb_004944_030 Hb_001100_020--Hb_002400_110 Hb_001100_020--Hb_072149_010 Hb_001100_020--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_001100_020--Hb_001136_140 Hb_002342_040 Hb_002342_040 Hb_122911_010--Hb_002342_040 Hb_122911_010--Hb_001100_020 Hb_122911_010--Hb_002400_110 Hb_122911_010--Hb_072149_010 Hb_002400_110--Hb_072149_010 Hb_002400_110--Hb_004944_030 Hb_002400_110--Hb_001136_140 Hb_072149_010--Hb_004944_030 Hb_072149_010--Hb_001136_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.1272 0 0 0.0393512 0.0210339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0448649 0 0 16.3545 0

CAGE analysis