Hb_188279_010

Information

Type -
Description -
Location Contig188279: 7171-10303
Sequence    

Annotation

kegg
ID rcu:RCOM_0742740
description hypothetical protein
nr
ID XP_010558357.1
description PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID B9SHR6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0742740 PE=4 SV=1
Gene Ontology
ID GO:0005886
description rna polymerase core protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188279_010 0.0 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
2 Hb_000173_230 0.0771515379 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
3 Hb_001847_020 0.077670653 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
4 Hb_003683_160 0.0796269565 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
5 Hb_007317_210 0.0935376664 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
6 Hb_011571_010 0.0992166551 - - Metal tolerance protein C4, putative [Ricinus communis]
7 Hb_009048_040 0.1007097311 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
8 Hb_004324_070 0.1009211993 - - protein phosphatase 2C [Hevea brasiliensis]
9 Hb_000080_190 0.1012354998 - - -
10 Hb_003862_050 0.1015201403 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
11 Hb_000008_470 0.1041535573 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
12 Hb_010172_050 0.1043179614 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
13 Hb_010795_010 0.1076603729 - - protein with unknown function [Ricinus communis]
14 Hb_000934_270 0.108836381 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
15 Hb_003728_080 0.1089681418 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
16 Hb_000123_120 0.1090183978 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_007951_050 0.1094906202 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000721_010 0.1101952939 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000699_140 0.1103127364 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
20 Hb_001450_050 0.1104142466 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_188279_010 Hb_188279_010 Hb_000173_230 Hb_000173_230 Hb_188279_010--Hb_000173_230 Hb_001847_020 Hb_001847_020 Hb_188279_010--Hb_001847_020 Hb_003683_160 Hb_003683_160 Hb_188279_010--Hb_003683_160 Hb_007317_210 Hb_007317_210 Hb_188279_010--Hb_007317_210 Hb_011571_010 Hb_011571_010 Hb_188279_010--Hb_011571_010 Hb_009048_040 Hb_009048_040 Hb_188279_010--Hb_009048_040 Hb_000173_230--Hb_009048_040 Hb_000934_270 Hb_000934_270 Hb_000173_230--Hb_000934_270 Hb_001675_180 Hb_001675_180 Hb_000173_230--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000173_230--Hb_085781_010 Hb_013405_030 Hb_013405_030 Hb_000173_230--Hb_013405_030 Hb_000926_020 Hb_000926_020 Hb_001847_020--Hb_000926_020 Hb_000721_010 Hb_000721_010 Hb_001847_020--Hb_000721_010 Hb_001847_020--Hb_011571_010 Hb_000000_080 Hb_000000_080 Hb_001847_020--Hb_000000_080 Hb_001847_020--Hb_003683_160 Hb_004324_070 Hb_004324_070 Hb_003683_160--Hb_004324_070 Hb_181288_020 Hb_181288_020 Hb_003683_160--Hb_181288_020 Hb_000069_110 Hb_000069_110 Hb_003683_160--Hb_000069_110 Hb_000080_190 Hb_000080_190 Hb_003683_160--Hb_000080_190 Hb_003683_160--Hb_011571_010 Hb_007317_210--Hb_011571_010 Hb_002496_030 Hb_002496_030 Hb_007317_210--Hb_002496_030 Hb_007951_050 Hb_007951_050 Hb_007317_210--Hb_007951_050 Hb_004109_090 Hb_004109_090 Hb_007317_210--Hb_004109_090 Hb_000395_170 Hb_000395_170 Hb_007317_210--Hb_000395_170 Hb_000170_210 Hb_000170_210 Hb_007317_210--Hb_000170_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.152 26.8373 47.4089 32.5311 69.2631 93.5043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.8941 75.8156 134.823 29.5353 41.7588

CAGE analysis