Hb_188281_010

Information

Type -
Description -
Location Contig188281: 5199-8252
Sequence    

Annotation

kegg
ID rcu:RCOM_0515640
description carboxylic ester hydrolase, putative
nr
ID XP_002528712.1
description carboxylic ester hydrolase, putative [Ricinus communis]
swissprot
ID Q9LZS7
description GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1
trembl
ID B9SRU3
description Carboxylic ester hydrolase, putative OS=Ricinus communis GN=RCOM_0515640 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g03610-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18601: 5185-8009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188281_010 0.0 - - carboxylic ester hydrolase, putative [Ricinus communis]
2 Hb_002893_030 0.1218920007 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
3 Hb_000260_110 0.1341330018 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_007163_050 0.1390281316 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
5 Hb_000365_280 0.1426730819 - - calcium binding protein/cast, putative [Ricinus communis]
6 Hb_000742_290 0.1485790068 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_001675_290 0.1494763935 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
8 Hb_023768_010 0.1567492973 - - -
9 Hb_000085_410 0.1569615963 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
10 Hb_004007_070 0.1573036907 - - adenylsulfate kinase, putative [Ricinus communis]
11 Hb_116091_010 0.1599171528 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
12 Hb_103942_030 0.1620802213 - - protein with unknown function [Ricinus communis]
13 Hb_001102_160 0.1634101158 - - PREDICTED: galacturonokinase [Jatropha curcas]
14 Hb_000479_060 0.1634630059 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
15 Hb_002026_050 0.1642661589 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
16 Hb_081864_010 0.16611966 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_002762_100 0.166961365 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000069_560 0.1674254862 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
19 Hb_001059_110 0.1693707091 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
20 Hb_000020_200 0.1702322232 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]

Gene co-expression network

sample Hb_188281_010 Hb_188281_010 Hb_002893_030 Hb_002893_030 Hb_188281_010--Hb_002893_030 Hb_000260_110 Hb_000260_110 Hb_188281_010--Hb_000260_110 Hb_007163_050 Hb_007163_050 Hb_188281_010--Hb_007163_050 Hb_000365_280 Hb_000365_280 Hb_188281_010--Hb_000365_280 Hb_000742_290 Hb_000742_290 Hb_188281_010--Hb_000742_290 Hb_001675_290 Hb_001675_290 Hb_188281_010--Hb_001675_290 Hb_004007_070 Hb_004007_070 Hb_002893_030--Hb_004007_070 Hb_002893_030--Hb_000365_280 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_007749_020 Hb_007749_020 Hb_007163_050--Hb_007749_020 Hb_007163_050--Hb_002026_050 Hb_000163_040 Hb_000163_040 Hb_007163_050--Hb_000163_040 Hb_000563_140 Hb_000563_140 Hb_007163_050--Hb_000563_140 Hb_001514_250 Hb_001514_250 Hb_007163_050--Hb_001514_250 Hb_000479_060 Hb_000479_060 Hb_000365_280--Hb_000479_060 Hb_000365_280--Hb_004007_070 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000109_190 Hb_000109_190 Hb_000365_280--Hb_000109_190 Hb_000365_280--Hb_002026_050 Hb_004531_130 Hb_004531_130 Hb_000742_290--Hb_004531_130 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_010690_010 Hb_010690_010 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050 Hb_001675_290--Hb_007749_020 Hb_036029_020 Hb_036029_020 Hb_001675_290--Hb_036029_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_077694_020 Hb_077694_020 Hb_001675_290--Hb_077694_020 Hb_004970_100 Hb_004970_100 Hb_001675_290--Hb_004970_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206575 14.4608 16.8499 55.0401 0.436808 0.408684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22703 0.557227 1.61455 2.73936 9.4311

CAGE analysis