Hb_188281_030

Information

Type -
Description -
Location Contig188281: 19484-23235
Sequence    

Annotation

kegg
ID tcc:TCM_022528
description Uridine-ribohydrolase 1 isoform 1
nr
ID XP_012066471.1
description PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
swissprot
ID Q9SJM7
description Uridine nucleosidase 1 OS=Arabidopsis thaliana GN=URH1 PE=1 SV=2
trembl
ID A0A067LE21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23665 PE=4 SV=1
Gene Ontology
ID GO:0005829
description uridine nucleosidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18603: 19518-23106 , PASA_asmbl_18604: 20356-20688 , PASA_asmbl_18605: 22772-22905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188281_030 0.0 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
2 Hb_124677_030 0.0892052822 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
3 Hb_000345_460 0.1155344015 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
4 Hb_000331_350 0.1262726101 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
5 Hb_000282_050 0.1264191109 - - calcineurin B, putative [Ricinus communis]
6 Hb_002027_440 0.126962715 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001221_030 0.1271193594 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
8 Hb_011242_050 0.1289901888 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
9 Hb_006711_090 0.1309764646 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
10 Hb_007850_030 0.1331820686 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
11 Hb_000765_060 0.1351558561 - - Alcohol dehydrogenase-like 6 [Glycine soja]
12 Hb_002007_320 0.1361086269 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
13 Hb_000005_110 0.1401679994 - - histone H2B1 [Hevea brasiliensis]
14 Hb_002693_030 0.1409276588 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
15 Hb_002193_060 0.1409517751 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
16 Hb_005754_040 0.1435997206 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
17 Hb_000364_170 0.14548657 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
18 Hb_000110_050 0.1455226484 - - -
19 Hb_003813_060 0.1465406097 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000206_230 0.1467962843 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_188281_030 Hb_188281_030 Hb_124677_030 Hb_124677_030 Hb_188281_030--Hb_124677_030 Hb_000345_460 Hb_000345_460 Hb_188281_030--Hb_000345_460 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_002027_440 Hb_002027_440 Hb_188281_030--Hb_002027_440 Hb_001221_030 Hb_001221_030 Hb_188281_030--Hb_001221_030 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_124677_030--Hb_000345_460 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120 Hb_000345_460--Hb_002027_440 Hb_000005_110 Hb_000005_110 Hb_000345_460--Hb_000005_110 Hb_011242_050 Hb_011242_050 Hb_000345_460--Hb_011242_050 Hb_000345_460--Hb_001221_030 Hb_010172_110 Hb_010172_110 Hb_000331_350--Hb_010172_110 Hb_000310_120 Hb_000310_120 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030 Hb_000622_130 Hb_000622_130 Hb_000282_050--Hb_000622_130 Hb_007741_130 Hb_007741_130 Hb_000282_050--Hb_007741_130 Hb_007044_090 Hb_007044_090 Hb_000282_050--Hb_007044_090 Hb_000282_050--Hb_124677_030 Hb_004567_010 Hb_004567_010 Hb_000282_050--Hb_004567_010 Hb_002027_440--Hb_011242_050 Hb_001863_070 Hb_001863_070 Hb_002027_440--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_002027_440--Hb_001329_070 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_000684_030 Hb_000684_030 Hb_001221_030--Hb_000684_030 Hb_000174_260 Hb_000174_260 Hb_001221_030--Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_001221_030--Hb_005276_040 Hb_003605_020 Hb_003605_020 Hb_001221_030--Hb_003605_020 Hb_000200_300 Hb_000200_300 Hb_001221_030--Hb_000200_300 Hb_000330_090 Hb_000330_090 Hb_001221_030--Hb_000330_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64376 4.09897 28.7967 30.2763 2.70605 2.92121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73293 15.5772 6.03796 12.9739 9.34082

CAGE analysis