Hb_188281_050

Information

Type -
Description -
Location Contig188281: 34846-43867
Sequence    

Annotation

kegg
ID vvi:100256364
description solute carrier family 35 member F1-like
nr
ID XP_010654063.1
description PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
swissprot
ID Q8BGK5
description Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=2 SV=1
trembl
ID D7TJ49
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18608: 37989-43953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188281_050 0.0 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
2 Hb_013848_030 0.1145786299 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
3 Hb_000112_050 0.1222828627 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
4 Hb_001040_200 0.130130519 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_003562_030 0.1325482981 - - -
6 Hb_003085_080 0.1341608763 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_001493_020 0.1361613247 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
8 Hb_002475_030 0.1408011452 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000215_250 0.1414954849 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_003106_110 0.1484127007 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
11 Hb_003842_010 0.1488494484 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000203_080 0.1492163069 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
13 Hb_002811_020 0.1495440958 - - Cysteine synthase [Morus notabilis]
14 Hb_000594_160 0.1518084433 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
15 Hb_003847_170 0.1522160897 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
16 Hb_001114_120 0.1545458881 - - protein with unknown function [Ricinus communis]
17 Hb_002307_010 0.1549563249 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
18 Hb_099157_010 0.1571999284 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
19 Hb_003640_010 0.1598276498 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_015306_010 0.1599990364 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]

Gene co-expression network

sample Hb_188281_050 Hb_188281_050 Hb_013848_030 Hb_013848_030 Hb_188281_050--Hb_013848_030 Hb_000112_050 Hb_000112_050 Hb_188281_050--Hb_000112_050 Hb_001040_200 Hb_001040_200 Hb_188281_050--Hb_001040_200 Hb_003562_030 Hb_003562_030 Hb_188281_050--Hb_003562_030 Hb_003085_080 Hb_003085_080 Hb_188281_050--Hb_003085_080 Hb_001493_020 Hb_001493_020 Hb_188281_050--Hb_001493_020 Hb_003640_010 Hb_003640_010 Hb_013848_030--Hb_003640_010 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_000215_250 Hb_000215_250 Hb_013848_030--Hb_000215_250 Hb_013848_030--Hb_003085_080 Hb_002811_020 Hb_002811_020 Hb_013848_030--Hb_002811_020 Hb_001114_120 Hb_001114_120 Hb_000112_050--Hb_001114_120 Hb_003847_050 Hb_003847_050 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000203_080 Hb_000203_080 Hb_000112_050--Hb_000203_080 Hb_000112_050--Hb_001040_200 Hb_002448_020 Hb_002448_020 Hb_000112_050--Hb_002448_020 Hb_000594_160 Hb_000594_160 Hb_001040_200--Hb_000594_160 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_007386_030 Hb_007386_030 Hb_001040_200--Hb_007386_030 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_004079_100 Hb_004079_100 Hb_001040_200--Hb_004079_100 Hb_001040_200--Hb_002448_020 Hb_000834_040 Hb_000834_040 Hb_003562_030--Hb_000834_040 Hb_003562_030--Hb_001040_200 Hb_003562_030--Hb_000112_050 Hb_003562_030--Hb_003640_010 Hb_001047_170 Hb_001047_170 Hb_003562_030--Hb_001047_170 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_029977_010 Hb_029977_010 Hb_001493_020--Hb_029977_010 Hb_000793_040 Hb_000793_040 Hb_001493_020--Hb_000793_040 Hb_001493_020--Hb_000215_250 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_020378_010 Hb_020378_010 Hb_001493_020--Hb_020378_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208027 1.41376 2.07907 3.14934 0.0438344 0.337393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0618899 5.95655 2.34554

CAGE analysis