Hb_188742_010

Information

Type -
Description -
Location Contig188742: 2-824
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12290g
description POPTRDRAFT_780716; hypothetical protein
nr
ID XP_002326036.2
description hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9IQS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12290g PE=4 SV=2
Gene Ontology
ID GO:0008171
description trans-resveratrol di-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188742_010 0.0 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
2 Hb_026196_020 0.0471006886 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_124677_070 0.0569523551 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
4 Hb_000141_050 0.066276304 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
5 Hb_000896_030 0.080193029 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_040 0.0807920394 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_012675_010 0.0838575163 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000802_040 0.0853546093 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
9 Hb_008895_010 0.0874731541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004324_180 0.0874835031 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_039046_010 0.0877176003 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
12 Hb_009615_140 0.0878551774 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
13 Hb_176760_010 0.0878677495 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
14 Hb_126871_010 0.0878848609 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
15 Hb_000172_040 0.0879268729 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
16 Hb_006111_050 0.0881612818 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
17 Hb_001369_490 0.0883868957 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
18 Hb_004881_090 0.0887925377 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
19 Hb_007058_020 0.0888387223 - - -
20 Hb_001926_060 0.0890142507 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_188742_010 Hb_188742_010 Hb_026196_020 Hb_026196_020 Hb_188742_010--Hb_026196_020 Hb_124677_070 Hb_124677_070 Hb_188742_010--Hb_124677_070 Hb_000141_050 Hb_000141_050 Hb_188742_010--Hb_000141_050 Hb_000896_030 Hb_000896_030 Hb_188742_010--Hb_000896_030 Hb_000742_040 Hb_000742_040 Hb_188742_010--Hb_000742_040 Hb_012675_010 Hb_012675_010 Hb_188742_010--Hb_012675_010 Hb_026196_020--Hb_124677_070 Hb_000802_040 Hb_000802_040 Hb_026196_020--Hb_000802_040 Hb_010327_040 Hb_010327_040 Hb_026196_020--Hb_010327_040 Hb_026196_020--Hb_000742_040 Hb_026196_020--Hb_000896_030 Hb_124677_070--Hb_000742_040 Hb_124677_070--Hb_000802_040 Hb_002999_020 Hb_002999_020 Hb_124677_070--Hb_002999_020 Hb_124677_070--Hb_010327_040 Hb_000141_050--Hb_012675_010 Hb_000733_140 Hb_000733_140 Hb_000141_050--Hb_000733_140 Hb_001343_070 Hb_001343_070 Hb_000141_050--Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_000141_050--Hb_002909_030 Hb_001689_060 Hb_001689_060 Hb_000141_050--Hb_001689_060 Hb_002918_100 Hb_002918_100 Hb_000141_050--Hb_002918_100 Hb_131748_010 Hb_131748_010 Hb_000896_030--Hb_131748_010 Hb_000134_140 Hb_000134_140 Hb_000896_030--Hb_000134_140 Hb_000340_170 Hb_000340_170 Hb_000896_030--Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_000896_030--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_000896_030--Hb_000002_020 Hb_004957_040 Hb_004957_040 Hb_000896_030--Hb_004957_040 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000742_040--Hb_000802_040 Hb_164853_010 Hb_164853_010 Hb_012675_010--Hb_164853_010 Hb_003420_010 Hb_003420_010 Hb_012675_010--Hb_003420_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.25534 17.8484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.357048

CAGE analysis