Hb_188964_010

Information

Type -
Description -
Location Contig188964: 46-1479
Sequence    

Annotation

kegg
ID rcu:RCOM_1797950
description maintenance of killer 16 (mak16) protein, putative
nr
ID XP_002535013.1
description maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
swissprot
ID Q9UTE6
description Protein mak16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak16 PE=3 SV=1
trembl
ID B9T9U4
description Maintenance of killer 16 (Mak16) protein, putative OS=Ricinus communis GN=RCOM_1797950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18637: 829-1633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188964_010 0.0 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
2 Hb_005228_080 0.0918730997 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
3 Hb_003581_020 0.1098424295 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
4 Hb_000906_060 0.1106206092 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
5 Hb_004567_100 0.1110053935 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
6 Hb_001582_030 0.1110880835 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
7 Hb_000613_100 0.1145246906 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
8 Hb_007441_070 0.1188260019 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
9 Hb_000261_520 0.1189056552 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
10 Hb_000025_310 0.1194322719 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000940_040 0.1203254226 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
12 Hb_004225_130 0.120415476 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
13 Hb_002341_030 0.1260691012 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
14 Hb_004656_060 0.1264441998 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
15 Hb_009851_110 0.1271906684 - - structural constituent of ribosome, putative [Ricinus communis]
16 Hb_002235_320 0.1292598539 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
17 Hb_011612_010 0.1309737511 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_005895_040 0.1333099485 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
19 Hb_017711_020 0.1336865473 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
20 Hb_003716_020 0.1338106003 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]

Gene co-expression network

sample Hb_188964_010 Hb_188964_010 Hb_005228_080 Hb_005228_080 Hb_188964_010--Hb_005228_080 Hb_003581_020 Hb_003581_020 Hb_188964_010--Hb_003581_020 Hb_000906_060 Hb_000906_060 Hb_188964_010--Hb_000906_060 Hb_004567_100 Hb_004567_100 Hb_188964_010--Hb_004567_100 Hb_001582_030 Hb_001582_030 Hb_188964_010--Hb_001582_030 Hb_000613_100 Hb_000613_100 Hb_188964_010--Hb_000613_100 Hb_005228_080--Hb_004567_100 Hb_002687_190 Hb_002687_190 Hb_005228_080--Hb_002687_190 Hb_002235_320 Hb_002235_320 Hb_005228_080--Hb_002235_320 Hb_000003_790 Hb_000003_790 Hb_005228_080--Hb_000003_790 Hb_005228_080--Hb_003581_020 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_004724_360 Hb_004724_360 Hb_000906_060--Hb_004724_360 Hb_001504_160 Hb_001504_160 Hb_000906_060--Hb_001504_160 Hb_012016_020 Hb_012016_020 Hb_000906_060--Hb_012016_020 Hb_012654_010 Hb_012654_010 Hb_000906_060--Hb_012654_010 Hb_002341_030 Hb_002341_030 Hb_000906_060--Hb_002341_030 Hb_001575_080 Hb_001575_080 Hb_000906_060--Hb_001575_080 Hb_005214_160 Hb_005214_160 Hb_004567_100--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_004567_100--Hb_002701_080 Hb_004567_100--Hb_012654_010 Hb_000059_150 Hb_000059_150 Hb_004567_100--Hb_000059_150 Hb_003506_080 Hb_003506_080 Hb_004567_100--Hb_003506_080 Hb_000270_140 Hb_000270_140 Hb_004567_100--Hb_000270_140 Hb_005000_270 Hb_005000_270 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_000134_360 Hb_000134_360 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_008528_010 Hb_008528_010 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_000849_100 Hb_000849_100 Hb_000613_100--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_000613_100--Hb_006002_030 Hb_000613_100--Hb_003716_020 Hb_000613_100--Hb_001582_030 Hb_000613_100--Hb_002235_320 Hb_000261_520 Hb_000261_520 Hb_000613_100--Hb_000261_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.034 10.8222 7.65737 5.56255 38.2614 41.5479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0135 8.43699 8.78343 7.07262 3.14138

CAGE analysis