Hb_189099_020

Information

Type -
Description -
Location Contig189099: 35518-36027
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp02
description nad9; NADH dehydrogenase subunit 9
nr
ID BAO50883.1
description NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
swissprot
ID Q95748
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana GN=NAD9 PE=2 SV=2
trembl
ID W6JNC9
description NADH dehydrogenase subunit 9 OS=Hevea brasiliensis GN=nad9 PE=3 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase subunit 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189099_020 0.0 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
2 Hb_088080_030 0.0939203003 - - ribosomal protein S4 [Hevea brasiliensis]
3 Hb_062192_030 0.1039829583 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
4 Hb_034168_010 0.1195911128 - - hypothetical protein [Azospirillum sp. CAG:260]
5 Hb_000920_020 0.1226716759 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
6 Hb_041813_030 0.1290645401 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
7 Hb_001338_080 0.1336179153 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
8 Hb_012940_020 0.1372141848 - - zeaxanthin epoxidase, putative [Ricinus communis]
9 Hb_034168_070 0.1394638121 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
10 Hb_042463_070 0.1395387277 - - 60S ribosomal protein L16, putative [Ricinus communis]
11 Hb_072212_020 0.1431639793 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
12 Hb_003125_100 0.1451872866 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
13 Hb_062273_010 0.1471136343 - - ATP synthase F0 subunit 9 [Chara vulgaris]
14 Hb_000156_240 0.1473950121 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
15 Hb_051924_010 0.1498923898 - - BnaA01g34100D [Brassica napus]
16 Hb_001083_040 0.1511849388 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
17 Hb_077242_020 0.1534039253 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
18 Hb_159305_010 0.1536186941 - - rpl2 [Jatropha curcas]
19 Hb_006925_030 0.1544305301 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
20 Hb_034455_010 0.1577357088 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_189099_020 Hb_189099_020 Hb_088080_030 Hb_088080_030 Hb_189099_020--Hb_088080_030 Hb_062192_030 Hb_062192_030 Hb_189099_020--Hb_062192_030 Hb_034168_010 Hb_034168_010 Hb_189099_020--Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_189099_020--Hb_000920_020 Hb_041813_030 Hb_041813_030 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_088080_030--Hb_041813_030 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_034168_010--Hb_000920_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_020 Hb_062192_020 Hb_034168_010--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_034168_010--Hb_002551_030 Hb_034168_010--Hb_062192_030 Hb_000920_020--Hb_042463_070 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_001338_080--Hb_182972_020 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213214 0.477898 1.07891 0.698001 0.261271 0.0996662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0.102089 0.694571 0.423637 18.2097

CAGE analysis