Hb_189118_010

Information

Type -
Description -
Location Contig189118: 3-899
Sequence    

Annotation

kegg
ID cmo:103486784
description extended synaptotagmin-1
nr
ID XP_008443079.1
description PREDICTED: extended synaptotagmin-1 [Cucumis melo]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A0A0LF39
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G809980 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein quirky

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18769: 1597-1934 , PASA_asmbl_18770: 990-1921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189118_010 0.0 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
2 Hb_000086_590 0.1033047296 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
3 Hb_010710_010 0.1034025355 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_005399_010 0.1091083121 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_034271_030 0.1117105285 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
6 Hb_049675_010 0.1125166984 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_000230_080 0.1186240414 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_001771_130 0.1191110824 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
9 Hb_123777_030 0.119668693 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
10 Hb_004316_120 0.1201934504 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Populus euphratica]
11 Hb_001476_140 0.1210534857 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
12 Hb_000016_110 0.1216701743 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
13 Hb_010436_020 0.121777788 - - Dicer-like protein 4 [Morus notabilis]
14 Hb_000077_130 0.1250563229 - - PREDICTED: callose synthase 12 [Jatropha curcas]
15 Hb_000723_260 0.1254751763 - - ethylene insensitive protein, putative [Ricinus communis]
16 Hb_000413_180 0.12646442 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_000386_030 0.1271059111 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
18 Hb_012395_190 0.1307895158 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
19 Hb_005205_020 0.1335833246 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
20 Hb_000497_140 0.1343424589 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]

Gene co-expression network

sample Hb_189118_010 Hb_189118_010 Hb_000086_590 Hb_000086_590 Hb_189118_010--Hb_000086_590 Hb_010710_010 Hb_010710_010 Hb_189118_010--Hb_010710_010 Hb_005399_010 Hb_005399_010 Hb_189118_010--Hb_005399_010 Hb_034271_030 Hb_034271_030 Hb_189118_010--Hb_034271_030 Hb_049675_010 Hb_049675_010 Hb_189118_010--Hb_049675_010 Hb_000230_080 Hb_000230_080 Hb_189118_010--Hb_000230_080 Hb_000086_590--Hb_010710_010 Hb_006091_030 Hb_006091_030 Hb_000086_590--Hb_006091_030 Hb_000413_180 Hb_000413_180 Hb_000086_590--Hb_000413_180 Hb_123777_030 Hb_123777_030 Hb_000086_590--Hb_123777_030 Hb_000723_260 Hb_000723_260 Hb_000086_590--Hb_000723_260 Hb_000497_140 Hb_000497_140 Hb_000086_590--Hb_000497_140 Hb_010710_010--Hb_000230_080 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000016_110 Hb_000016_110 Hb_005399_010--Hb_000016_110 Hb_012016_020 Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_005399_010--Hb_000497_140 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_000106_040 Hb_000106_040 Hb_005399_010--Hb_000106_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_034271_030--Hb_000723_260 Hb_000122_130 Hb_000122_130 Hb_049675_010--Hb_000122_130 Hb_049675_010--Hb_010436_020 Hb_049675_010--Hb_012490_040 Hb_049675_010--Hb_034271_030 Hb_002890_340 Hb_002890_340 Hb_049675_010--Hb_002890_340 Hb_005280_010 Hb_005280_010 Hb_049675_010--Hb_005280_010 Hb_000230_080--Hb_000413_180 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_000230_080--Hb_003750_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7339 12.4267 1.07922 5.33268 30.1862 43.6958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8593 9.8291 29.4747 13.0907 7.14087

CAGE analysis