Hb_189208_020

Information

Type -
Description -
Location Contig189208: 9380-10303
Sequence    

Annotation

kegg
ID rcu:RCOM_1343860
description LRX2, putative
nr
ID XP_002515194.1
description LRX2, putative [Ricinus communis]
swissprot
ID O82170
description Protein HAIKU1 OS=Arabidopsis thaliana GN=IKU1 PE=1 SV=1
trembl
ID B9RN55
description LRX2, putative OS=Ricinus communis GN=RCOM_1343860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18781: 9167-9607 , PASA_asmbl_18783: 10918-11060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_020 0.0 - - LRX2, putative [Ricinus communis]
2 Hb_002097_200 0.1092271998 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_001894_050 0.1097039038 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
4 Hb_003175_030 0.1104211839 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
5 Hb_005725_210 0.1145395506 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
6 Hb_006788_140 0.1190978685 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
7 Hb_001564_080 0.1206599857 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
8 Hb_000451_070 0.1212764125 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001817_160 0.1228490031 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000019_040 0.1232251538 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
11 Hb_002042_130 0.1244264792 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
12 Hb_010381_030 0.1257757811 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
13 Hb_088753_010 0.1270852284 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
14 Hb_000442_010 0.127169988 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
15 Hb_000302_260 0.127714211 - - hypothetical protein [Bruguiera gymnorhiza]
16 Hb_000649_110 0.1277160282 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
17 Hb_001153_180 0.131162235 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_008511_100 0.1319765012 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
19 Hb_003752_100 0.1319816563 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
20 Hb_002005_110 0.1324095164 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_189208_020 Hb_189208_020 Hb_002097_200 Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_001564_080 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_002042_130 Hb_002042_130 Hb_001894_050--Hb_002042_130 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003175_030--Hb_003752_100 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080 Hb_002798_070 Hb_002798_070 Hb_005725_210--Hb_002798_070 Hb_000442_010 Hb_000442_010 Hb_005725_210--Hb_000442_010 Hb_003030_060 Hb_003030_060 Hb_005725_210--Hb_003030_060 Hb_004916_010 Hb_004916_010 Hb_005725_210--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_005725_210--Hb_002818_030 Hb_001828_130 Hb_001828_130 Hb_005725_210--Hb_001828_130 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_006788_140--Hb_000987_060 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_006788_140--Hb_002097_200 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1891 60.4033 16.5029 15.9756 9.81357 18.1437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5545 27.2044 18.0498 22.333 14.0538

CAGE analysis