Hb_189208_060

Information

Type -
Description -
Location Contig189208: 34550-35614
Sequence    

Annotation

kegg
ID rcu:RCOM_1343610
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012082993.1
description PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
swissprot
ID Q9S6Z8
description Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1
trembl
ID A0A067K944
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14105 PE=4 SV=1
Gene Ontology
ID GO:0009705
description two-pore potassium channel 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18787: 33141-35498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_060 0.0 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
2 Hb_001160_050 0.078020105 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
3 Hb_002374_030 0.0780671807 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
4 Hb_000836_420 0.0864020126 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_011794_050 0.0867652705 - - transcription factor, putative [Ricinus communis]
6 Hb_001660_080 0.0979092308 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
7 Hb_000152_410 0.1007188788 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_000071_090 0.1013043998 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
9 Hb_000878_090 0.1095117656 - - sucrose-phosphatase family protein [Populus trichocarpa]
10 Hb_026016_010 0.1097947614 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_000319_010 0.1104116221 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
12 Hb_000035_140 0.1105708876 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
13 Hb_003078_070 0.1106337277 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
14 Hb_004040_010 0.1134567271 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_000032_090 0.1136971256 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004837_200 0.1180386005 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
17 Hb_001769_120 0.121926125 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
18 Hb_012496_020 0.1278182764 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_008406_070 0.1288542249 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
20 Hb_009907_020 0.129237077 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]

Gene co-expression network

sample Hb_189208_060 Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_189208_060--Hb_001160_050 Hb_002374_030 Hb_002374_030 Hb_189208_060--Hb_002374_030 Hb_000836_420 Hb_000836_420 Hb_189208_060--Hb_000836_420 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_001660_080 Hb_001660_080 Hb_189208_060--Hb_001660_080 Hb_000152_410 Hb_000152_410 Hb_189208_060--Hb_000152_410 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_002374_030 Hb_000878_090 Hb_000878_090 Hb_001160_050--Hb_000878_090 Hb_009907_020 Hb_009907_020 Hb_001160_050--Hb_009907_020 Hb_001160_050--Hb_000152_410 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_002374_030--Hb_000836_420 Hb_000836_420--Hb_001660_080 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_003078_070 Hb_003078_070 Hb_000836_420--Hb_003078_070 Hb_004040_010 Hb_004040_010 Hb_011794_050--Hb_004040_010 Hb_011794_050--Hb_002374_030 Hb_059318_010 Hb_059318_010 Hb_011794_050--Hb_059318_010 Hb_026016_010 Hb_026016_010 Hb_011794_050--Hb_026016_010 Hb_074966_010 Hb_074966_010 Hb_011794_050--Hb_074966_010 Hb_005381_010 Hb_005381_010 Hb_001660_080--Hb_005381_010 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_003029_010 Hb_003029_010 Hb_000152_410--Hb_003029_010 Hb_002596_090 Hb_002596_090 Hb_000152_410--Hb_002596_090 Hb_000152_410--Hb_000878_090 Hb_001769_120 Hb_001769_120 Hb_000152_410--Hb_001769_120 Hb_000152_410--Hb_000836_420 Hb_028487_040 Hb_028487_040 Hb_000152_410--Hb_028487_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153637 29.8001 45.1068 18.9726 0.0808557 0.187273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468809 0.0368738 0.272565 2.25067 11.6673

CAGE analysis