Hb_189216_010

Information

Type -
Description -
Location Contig189216: 5564-12332
Sequence    

Annotation

kegg
ID rcu:RCOM_1355420
description hypothetical protein
nr
ID XP_012082380.1
description PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16526 PE=4 SV=1
Gene Ontology
ID GO:0003677
description telomere repeat-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18793: 5550-12417 , PASA_asmbl_18795: 9686-12330 , PASA_asmbl_18796: 6407-6824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189216_010 0.0 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
2 Hb_005563_070 0.0631944396 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
3 Hb_000603_160 0.0644381644 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
4 Hb_002471_090 0.0681223725 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
5 Hb_000778_010 0.0698175754 - - hypothetical protein [Bacillus subtilis]
6 Hb_008748_030 0.0708075608 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002272_030 0.0719487039 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
8 Hb_012262_030 0.0727660697 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
9 Hb_172426_030 0.0731023008 - - acetylglucosaminyltransferase, putative [Ricinus communis]
10 Hb_000227_160 0.0742900168 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
11 Hb_006824_010 0.0749924699 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
12 Hb_000139_080 0.0752174202 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
13 Hb_005653_070 0.0755098141 - - K+ transport growth defect-like protein [Hevea brasiliensis]
14 Hb_003098_070 0.0760592039 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
15 Hb_004705_170 0.0765910712 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
16 Hb_000699_150 0.0769118384 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_007472_070 0.077155333 - - cir, putative [Ricinus communis]
18 Hb_007904_300 0.0775172802 - - copine, putative [Ricinus communis]
19 Hb_000704_030 0.0778837342 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
20 Hb_000365_230 0.0788089536 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]

Gene co-expression network

sample Hb_189216_010 Hb_189216_010 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_005563_070--Hb_000603_160 Hb_000704_030 Hb_000704_030 Hb_005563_070--Hb_000704_030 Hb_001141_420 Hb_001141_420 Hb_005563_070--Hb_001141_420 Hb_005162_090 Hb_005162_090 Hb_005563_070--Hb_005162_090 Hb_002572_020 Hb_002572_020 Hb_005563_070--Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_000521_240 Hb_000521_240 Hb_002471_090--Hb_000521_240 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_008748_030--Hb_000778_010 Hb_002272_030--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5545 24.3288 28.6389 33.4381 8.49986 12.8268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.244 20.2731 19.5116 23.5654 23.8906

CAGE analysis