Hb_189216_020

Information

Type -
Description -
Location Contig189216: 13619-16835
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12810g
description hypothetical protein
nr
ID XP_012082389.1
description PREDICTED: translin [Jatropha curcas]
swissprot
ID P79769
description Translin OS=Gallus gallus GN=TSN PE=1 SV=1
trembl
ID A0A067K259
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16527 PE=4 SV=1
Gene Ontology
ID GO:0043565
description translin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18797: 14431-16688
cDNA
(Sanger)
(ID:Location)		 012_B11.ab1: 14849-16676 , 020_C24.ab1: 14863-16676 , 027_P18.ab1: 16173-16676

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189216_020 0.0 - - PREDICTED: translin [Jatropha curcas]
2 Hb_000948_160 0.0615642544 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
3 Hb_002553_060 0.0690487909 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
4 Hb_001470_030 0.0709012388 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
5 Hb_003938_090 0.0714075782 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002994_030 0.0714784623 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
7 Hb_001946_400 0.0728739856 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
8 Hb_000069_720 0.0737530564 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
9 Hb_000078_120 0.0757270172 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
10 Hb_000840_200 0.0764039637 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
11 Hb_001599_040 0.0773598132 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
12 Hb_003647_140 0.077375825 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
13 Hb_001021_150 0.0781399859 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
14 Hb_008847_030 0.0784977481 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
15 Hb_000110_250 0.0809347124 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
16 Hb_000976_120 0.0813344666 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
17 Hb_001189_070 0.0821010582 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
18 Hb_003942_020 0.0829016306 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_000431_170 0.0834045141 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
20 Hb_003678_020 0.0837390594 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_189216_020 Hb_189216_020 Hb_000948_160 Hb_000948_160 Hb_189216_020--Hb_000948_160 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_002553_060--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_002994_030--Hb_000078_120 Hb_000696_330 Hb_000696_330 Hb_002994_030--Hb_000696_330 Hb_006831_140 Hb_006831_140 Hb_002994_030--Hb_006831_140 Hb_002994_030--Hb_001470_030 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001946_400--Hb_001599_040 Hb_001946_400--Hb_008847_030 Hb_001946_400--Hb_007416_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83874 7.47997 10.1499 10.4795 8.2905 10.3762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7242 18.4164 6.89216 10.3379 12.0655

CAGE analysis