Hb_189216_030

Information

Type -
Description -
Location Contig189216: 17696-27973
Sequence    

Annotation

kegg
ID rcu:RCOM_1355400
description Pleiotropic drug resistance protein, putative (EC:3.6.3.44)
nr
ID XP_002519513.1
description Pleiotropic drug resistance protein, putative [Ricinus communis]
swissprot
ID Q9SJK6
description Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=1 SV=3
trembl
ID B9S0J4
description Pleiotropic drug resistance protein, putative OS=Ricinus communis GN=RCOM_1355400 PE=3 SV=1
Gene Ontology
ID GO:0005576
description white-brown complex homolog protein 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18798: 26909-27071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189216_030 0.0 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
2 Hb_003994_190 0.1258173808 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000211_030 0.1291318896 - - sugar transporter, putative [Ricinus communis]
4 Hb_002374_080 0.1413293366 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
5 Hb_007044_120 0.1463857579 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
6 Hb_009620_020 0.148123847 - - conserved hypothetical protein [Ricinus communis]
7 Hb_020025_040 0.1490241357 - - sodium-bile acid cotransporter, putative [Ricinus communis]
8 Hb_011609_020 0.1505123937 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001638_230 0.1515308016 - - RNA-binding region-containing protein, putative [Ricinus communis]
10 Hb_001279_340 0.1516329717 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
11 Hb_000111_450 0.1531359908 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
12 Hb_001114_080 0.1531583326 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
13 Hb_004705_080 0.1551810416 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
14 Hb_002043_050 0.1553672875 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
15 Hb_006671_010 0.1554490264 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
16 Hb_002660_070 0.1556944072 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
17 Hb_000413_280 0.1557536344 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
18 Hb_000258_250 0.1578286891 - - Origin recognition complex subunit, putative [Ricinus communis]
19 Hb_002228_070 0.159719319 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
20 Hb_036790_020 0.1613044068 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_189216_030 Hb_189216_030 Hb_003994_190 Hb_003994_190 Hb_189216_030--Hb_003994_190 Hb_000211_030 Hb_000211_030 Hb_189216_030--Hb_000211_030 Hb_002374_080 Hb_002374_080 Hb_189216_030--Hb_002374_080 Hb_007044_120 Hb_007044_120 Hb_189216_030--Hb_007044_120 Hb_009620_020 Hb_009620_020 Hb_189216_030--Hb_009620_020 Hb_020025_040 Hb_020025_040 Hb_189216_030--Hb_020025_040 Hb_000111_450 Hb_000111_450 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_005928_100 Hb_005928_100 Hb_003994_190--Hb_005928_100 Hb_000130_110 Hb_000130_110 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_000805_110 Hb_000805_110 Hb_000211_030--Hb_000805_110 Hb_008643_200 Hb_008643_200 Hb_000211_030--Hb_008643_200 Hb_002217_020 Hb_002217_020 Hb_000211_030--Hb_002217_020 Hb_003362_030 Hb_003362_030 Hb_000211_030--Hb_003362_030 Hb_001856_200 Hb_001856_200 Hb_000211_030--Hb_001856_200 Hb_006671_010 Hb_006671_010 Hb_002374_080--Hb_006671_010 Hb_005054_210 Hb_005054_210 Hb_002374_080--Hb_005054_210 Hb_000676_390 Hb_000676_390 Hb_002374_080--Hb_000676_390 Hb_002374_080--Hb_003362_030 Hb_000803_200 Hb_000803_200 Hb_002374_080--Hb_000803_200 Hb_000920_200 Hb_000920_200 Hb_002374_080--Hb_000920_200 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_000638_250 Hb_000638_250 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_000071_070 Hb_000071_070 Hb_009620_020--Hb_000071_070 Hb_000225_060 Hb_000225_060 Hb_009620_020--Hb_000225_060 Hb_000011_400 Hb_000011_400 Hb_009620_020--Hb_000011_400 Hb_001123_320 Hb_001123_320 Hb_009620_020--Hb_001123_320 Hb_009620_020--Hb_020025_040 Hb_000483_260 Hb_000483_260 Hb_009620_020--Hb_000483_260 Hb_000236_040 Hb_000236_040 Hb_020025_040--Hb_000236_040 Hb_002228_070 Hb_002228_070 Hb_020025_040--Hb_002228_070 Hb_010098_050 Hb_010098_050 Hb_020025_040--Hb_010098_050 Hb_022250_060 Hb_022250_060 Hb_020025_040--Hb_022250_060 Hb_002217_350 Hb_002217_350 Hb_020025_040--Hb_002217_350 Hb_006615_240 Hb_006615_240 Hb_020025_040--Hb_006615_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109647 0.11283 0.351424 0.179666 0.0699988 0.0679537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.371962 0.386797 0.52063 0.203076 0.0446741

CAGE analysis